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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RYSKISDNYSSLLQVSEALGRAGLESSNLIVGIDFTKSNEWTGAKSFNRKSLHHLSNTPNPYEQAITIIGRTLAAFDEDN
LIPCYGFGDASTHDQDVFSFYPEGRFCNGFEEVLARYREIVPQLKLAGPTSFAPIIEMAMTVVEQSSGQYHVLVIIADGQ
VTRSVDTEHGRLSPQEQKTVDAIVKASTLPLSIVLVGVGDGPWDMMQEFADNIPARAFDNFQFVNFTEIMSKNKDQSRKE
TEFALSALMAIPPQYKATIELNLLGVRNGNIPQRIPLPPPVQ

The query sequence (length=282) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6k82:B 282 282 1.0000 1.0000 1.0000 0.0 6k83:B, 6k83:A, 6k83:C, 6k83:D, 6k83:E, 6k83:F, 6k83:G, 6k83:H, 6k85:B, 6k86:B, 6k89:B, 6k8a:A, 6k8a:B, 6k8b:A, 6k8b:B
2 8hmg:B 290 281 0.8723 0.8483 0.8754 0.0 8hmg:A, 8hmg:C, 8hmg:D, 8hmg:E, 8hmg:F, 8hmg:G, 8hmg:H, 8hmg:I, 8hmh:B, 8hmh:A, 6k88:A, 6k88:B
3 6kxk:D 553 193 0.2376 0.1212 0.3472 2.24e-20 6kxk:F, 6kxu:A, 6kxu:B, 6kxu:C, 6kxu:D, 6kxu:E, 6kxu:F, 6kxu:G, 6kxu:H
4 3uq8:A 322 19 0.0426 0.0373 0.6316 1.6 3bac:A, 3pn1:A, 4uco:A, 4ucr:A, 4ucs:A, 4uct:A, 4ucu:A, 4ucv:A, 4ufz:A
5 4i9e:A 383 28 0.0390 0.0287 0.3929 2.3 4i9c:A, 4i9e:B, 3ulq:A
6 6tgh:A 410 58 0.0532 0.0366 0.2586 3.8 6tgh:C, 6tgh:B, 6tgh:D, 6ti1:A, 6ti1:C, 6ti3:A, 6ti3:C, 6ti3:B, 6ti3:D, 6ti4:A, 6ti4:C, 4wxf:A, 4wxf:C, 4wxg:A, 4wxg:C, 6yrw:A, 6yrw:C, 6yrw:B, 6yrw:D
7 4dik:A 402 57 0.0567 0.0398 0.2807 7.1 4dik:B, 4dil:A, 4dil:B, 5v8s:A, 5v8s:B, 1vme:A, 1vme:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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