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BioLiP
>protein
RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1jgg:A 57 57 1.0000 1.0000 1.0000 1.24e-37 1jgg:B
2 2h1k:B 60 57 0.6491 0.6167 0.6491 7.03e-20 2h1k:A
3 8eml:A 58 57 0.5614 0.5517 0.5614 4.25e-17 8eml:B
4 1b72:A 68 54 0.5614 0.4706 0.5926 7.56e-17
5 4uus:A 67 55 0.5088 0.4328 0.5273 2.16e-14 4uus:E
6 2r5z:A 75 57 0.5439 0.4133 0.5439 2.74e-14 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
7 2me6:A 71 56 0.5263 0.4225 0.5357 7.77e-14
8 4cyc:A 66 55 0.5088 0.4394 0.5273 1.33e-13 1b8i:A
9 8pna:A 67 55 0.4912 0.4179 0.5091 1.49e-13 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
10 1ahd:P 68 57 0.5263 0.4412 0.5263 3.66e-13
11 6es3:K 72 56 0.4561 0.3611 0.4643 6.67e-13 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
12 3a01:A 78 55 0.4561 0.3333 0.4727 1.89e-12 3a01:E
13 1ig7:A 58 54 0.4561 0.4483 0.4815 3.08e-12
14 4rdu:D 62 54 0.4211 0.3871 0.4444 3.17e-12 4rdu:A, 4xrs:I, 4xrs:G
15 1zq3:P 68 57 0.4211 0.3529 0.4211 5.13e-12
16 1puf:A 77 54 0.4912 0.3636 0.5185 7.47e-12 2lp0:A
17 5zjr:A 64 54 0.4737 0.4219 0.5000 9.72e-12 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
18 3a01:F 61 57 0.5088 0.4754 0.5088 1.00e-11 3a01:B, 3lnq:A
19 6m3d:C 108 56 0.4386 0.2315 0.4464 2.14e-11 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
20 6m3d:C 108 48 0.3860 0.2037 0.4583 1.31e-10 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
21 3rkq:A 58 53 0.4035 0.3966 0.4340 2.12e-10 3rkq:B
22 5flv:M 229 52 0.4211 0.1048 0.4615 5.14e-10 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
23 2ld5:A 67 54 0.3509 0.2985 0.3704 1.00e-09
24 9b8u:B 66 49 0.4386 0.3788 0.5102 1.19e-09 9b8u:A, 9b8u:C, 9b8u:D
25 1fjl:A 65 57 0.4561 0.4000 0.4561 2.10e-09 1fjl:B, 1fjl:C
26 8ejo:A 56 53 0.4386 0.4464 0.4717 2.34e-09 8ejo:B, 8ejp:A, 8ejp:B
27 1nk2:P 77 54 0.4035 0.2987 0.4259 3.39e-09 1nk3:P
28 5eea:G 63 54 0.3333 0.3016 0.3519 6.14e-09 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
29 8osb:E 62 53 0.4561 0.4194 0.4906 9.83e-09
30 4rbo:A 55 53 0.4035 0.4182 0.4340 1.26e-08 4rbo:D
31 2lkx:A 68 53 0.4211 0.3529 0.4528 1.80e-08
32 4qtr:C 57 54 0.4035 0.4035 0.4259 3.35e-08 4qtr:A, 4qtr:B, 4qtr:D
33 3cmy:A 60 57 0.4211 0.4000 0.4211 5.72e-08
34 6e8c:A 135 54 0.4211 0.1778 0.4444 1.06e-07 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
35 6e8c:A 135 52 0.2982 0.1259 0.3269 0.009 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
36 5hod:A 61 56 0.3684 0.3443 0.3750 1.15e-05 5hod:D
37 1gt0:C 137 43 0.3158 0.1314 0.4186 1.03e-04 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
38 5wc9:A 136 54 0.3333 0.1397 0.3519 1.88e-04 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
39 3l1p:A 147 43 0.3158 0.1224 0.4186 8.70e-04 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
40 7xrc:C 134 45 0.3333 0.1418 0.4222 0.001 2xsd:C
41 8bx1:A 127 42 0.2982 0.1339 0.4048 0.003
42 8g8e:X 140 56 0.3509 0.1429 0.3571 0.003 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
43 8ik5:C 67 56 0.3509 0.2985 0.3571 0.006 8ike:C, 8ilw:C
44 3d1n:I 150 49 0.2982 0.1133 0.3469 0.008 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
45 4egc:A 539 41 0.2632 0.0278 0.3659 0.009
46 1le8:A 53 42 0.2105 0.2264 0.2857 0.26 1akh:A, 1yrn:A
47 7oi6:y 331 44 0.2632 0.0453 0.3409 3.1 8pk0:t
48 1lfu:P 82 34 0.1930 0.1341 0.3235 4.3 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
49 1hlv:A 131 24 0.1579 0.0687 0.3750 4.6
50 4tmk:A 210 33 0.2281 0.0619 0.3939 8.9 5tmp:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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