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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RYMRMILMFDMPTDTAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNHTANTAMVGRLKANNPKKGNITILTVTEKQFA
RMIYLYGDKNTSIANSEERLVFLGDNYC

The query sequence (length=108) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8q2n:D 108 108 1.0000 1.0000 1.0000 1.84e-78 8pk1:A, 8pk1:D, 8q2n:A
2 5xvn:F 108 105 0.7130 0.7130 0.7333 3.18e-57 5xvn:E, 5xvn:M, 5xvn:N, 5xvo:E, 5xvo:F, 5xvo:M, 5xvo:N, 5xvp:E, 5xvp:F
3 8ia4:B 92 89 0.3981 0.4674 0.4831 1.26e-25
4 8au6:A 248 35 0.1019 0.0444 0.3143 3.8
5 4q9n:A 295 85 0.1667 0.0610 0.2118 5.8 4q9n:B, 4q9n:C, 4q9n:D, 4q9n:E, 4q9n:F, 4q9n:G, 4q9n:H
6 3lvt:A 833 91 0.1944 0.0252 0.2308 7.4
7 6yxx:ES 152 58 0.1389 0.0987 0.2586 9.6 6yxy:ES

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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