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BioLiP
>protein
RYMRLLLMFDMPTDTASDRKAYRKFRKFLINEGFIMHQFSVYSKILLNDTANKAMLARLKQNNPQRGLITLLNVTEKQFS
RMIYLHGEQDNRVANSDERIVFLGE

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5xvn:F 108 105 1.0000 0.9722 1.0000 2.88e-75 5xvn:E, 5xvn:M, 5xvn:N, 5xvo:E, 5xvo:F, 5xvo:M, 5xvo:N, 5xvp:E, 5xvp:F
2 8q2n:D 108 105 0.7333 0.7130 0.7333 3.00e-57 8pk1:A, 8pk1:D, 8q2n:A
3 8ia4:B 92 86 0.3714 0.4239 0.4535 8.29e-24
4 5xy3:J 164 39 0.1238 0.0793 0.3333 4.6
5 8oxm:A 2748 36 0.1333 0.0051 0.3889 5.2 8oxm:B
6 7ni5:A 2791 36 0.1333 0.0050 0.3889 5.4 7ni4:A, 7ni4:B, 7ni5:B, 7ni6:A, 7ni6:B, 8oxq:A, 8oxq:B
7 7sic:A 2773 36 0.1333 0.0050 0.3889 5.4 8oxo:A, 8oxo:B, 8oxp:A, 8oxp:B, 7sic:B, 7sid:A, 7sid:C
8 6h61:A 660 30 0.1333 0.0212 0.4667 6.1 6g1s:A, 6g1x:A, 7nga:A
9 5zi5:A 850 65 0.1810 0.0224 0.2923 7.6 5zi5:B, 5zi7:A, 5zi7:B, 5zie:A, 5zie:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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