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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RYIVSPQLVLQVGKGQEVERALYLTPYDYIDEKSPIYYFLRSHLNIQQPEIVKRHILLTLRMTQLKGYLGNLLDIKDDII
IYSHKNNLEYSYVDNTIFNPFVYTQKKTLLKNDSFLYNVYPGACDFLVIWVARACDTSIPEFGSYEDVDNNIIKFETMLM
EVFPQLDLDITVESKFNNIFRTNLKLTGLKKIIQRVQDLDINYKSLLSRYDEHFINMTGNHFILNDEQLNLSIWDLDGTL
ALSSDGDTVMINNVKLFTDLVSDIDTQMERIKGDITYKVHLATPINSRIKLDIETSFIFIETATNNILLSSDKKISIILA
KNHISIKVKNHIPNIEKYFTFLVIAINAMFNSVQKSADFTKVETVYWSRICQNTKNKNRKPIIINYLDPGMKKISNNFYR
SDEKEVFINDNGIMFTCMDPLGKYNKVGFLNIFHDMRKYCIPCCFLHDQSHRSTFSSCVHQIDVEKKIVSPYILNFGKVV
TESKMSFLPIIFDAFLNDGMTANMEQDNKRLKETSGYHIVRCCAGDDIVRLRTTSDIIQFVNEDKNILIVNDMVYFPMNA
SDIGKKIHILIQEIVHEVMIVKKKESSDKIDFFPPNYKLLKDLFPKQTIQTPIQSDAGMVLTTDGFYIDGKLFNEDLSSK
YVTFTKNVIASDAVAKYFSPLFKYVISEAKDRFIKTWMINIMIHMNVDPNNIIPTLEKYYPNSGRAQI

The query sequence (length=708) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7amv:K 708 708 1.0000 1.0000 1.0000 0.0 8c8h:K, 6rfl:K
2 8dqw:E 354 90 0.0339 0.0678 0.2667 2.2 8dqx:E, 8dqz:E, 8dr0:E, 8dr1:E, 8dr3:E, 8dr4:E, 8dr5:E, 8dr6:E, 8dr7:E, 8fs3:E, 8fs4:E, 8fs5:E, 8fs6:E, 8fs7:E, 7sgz:E, 7sh2:E, 7st9:E, 7stb:E, 7ste:E, 7tfh:E, 7tfi:E, 7tfj:E, 7tfk:E, 7tfl:E, 7thj:E, 7thv:E, 8thb:E, 8thc:E, 8thd:E, 7ti8:E, 7tib:E, 7tic:E, 7tid:E, 7tku:E, 8tw7:5, 8tw8:5, 8twa:5, 8twb:5, 7u19:E, 7u1a:E, 7u1p:E
3 1cen:A 334 57 0.0268 0.0569 0.3333 2.6
4 1r3q:A 357 33 0.0169 0.0336 0.3636 3.2 2q71:A, 1r3s:A, 1r3t:A, 1r3v:A, 1r3w:A, 1r3y:A
5 6fpx:A 177 88 0.0325 0.1299 0.2614 3.3 5dno:A, 5eim:A, 5eim:B, 6fpq:A, 6fpx:C, 6fpx:E
6 6kbh:A 765 77 0.0268 0.0248 0.2468 4.2
7 8fae:A 468 95 0.0353 0.0534 0.2632 4.5 8fad:C, 8fad:E, 8fad:A, 8fae:C, 8fae:E
8 4xj3:A 369 41 0.0198 0.0379 0.3415 5.7 4txy:B, 4txz:B, 4ty0:B, 4xj5:A
9 4u03:A 389 41 0.0198 0.0360 0.3415 6.5 4txy:A, 4txz:A, 4ty0:A, 4u03:B, 4u0m:A, 4u0m:B, 4u0n:A, 4u0n:B, 4xj4:A
10 4psw:A 316 54 0.0198 0.0443 0.2593 6.9 1bob:A, 4psx:A, 4psx:D, 7xay:A
11 8fs8:E 332 67 0.0282 0.0602 0.2985 9.3 1sxj:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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