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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RWEGGYERTWEILKEEHHGQVRLGMMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSK
RAEKLTELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAA
KIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSECSLIRMGFPQHTIASLSDQDAKPSFS
MAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGEL
KDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGCIH

The query sequence (length=355) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ena:2 385 378 1.0000 0.9221 0.9392 0.0 8bvw:4, 8byq:4, 8ebs:E, 8ebt:E, 8ebu:E, 8ebv:E, 8ebw:E, 8ebx:E, 8eby:E, 7egb:2, 7egc:2, 7enc:2, 8gxq:HG, 8gxs:HG, 7lbm:a, 7nvr:6, 7nvw:6, 7nvx:6, 7nvy:6, 7nvz:6, 7nw0:6, 6o9l:6, 6o9m:6, 8wak:2, 8wal:2, 8wan:2, 8wao:2, 8wap:2, 8waq:2, 8war:2, 8was:2, 1z60:A
2 6nmi:E 366 337 0.8817 0.8552 0.9288 0.0
3 7ad8:D 280 333 0.7887 1.0000 0.8408 0.0 6ro4:D
4 8cen:6 383 386 0.4197 0.3890 0.3860 3.36e-90 8ceo:6, 7k01:6, 7k04:6, 7m2u:6, 7ml0:6, 7ml1:6, 7ml2:6, 7ml3:6, 7ml4:6, 7o4i:6, 7o4j:6, 7o4k:6, 7o4l:6, 7o72:6, 7o73:6, 7o75:6, 7zs9:6, 7zsa:6, 7zsb:6
5 6gym:6 335 343 0.3606 0.3821 0.3732 2.05e-68 5oqj:6, 5oqm:6
6 5o85:D 53 62 0.1465 0.9811 0.8387 7.43e-27 5o85:B
7 5nus:B 74 68 0.0676 0.3243 0.3529 7.04e-08 5obz:B
8 5d4y:A 314 103 0.0732 0.0828 0.2524 0.42 5d4y:B
9 5k1b:A 264 53 0.0563 0.0758 0.3774 0.71
10 6n8m:Y 128 103 0.0817 0.2266 0.2816 1.1 6n8n:Y, 6n8o:Y, 6rzz:s, 6s05:s
11 6gym:W 258 64 0.0592 0.0814 0.3281 1.4 5oqj:W, 5oqm:W
12 1uqw:A 487 64 0.0563 0.0411 0.3125 1.5 1uqw:B
13 7o4i:W 312 26 0.0366 0.0417 0.5000 3.0 8cen:W, 8ceo:W, 5fz5:W, 6gyl:W, 7ml0:W, 7ml1:W, 7ml2:W, 7ml4:W, 7o4j:W, 7o4k:W, 7o4l:W, 7o72:W, 7o73:W, 7o75:W, 7zs9:W, 7zsa:W, 7zsb:W
14 6r4n:C 147 46 0.0423 0.1020 0.3261 7.2 6r4n:A, 6r4n:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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