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BioLiP
>protein
RWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEG

The query sequence (length=46) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7dvq:M 191 46 1.0000 0.2408 1.0000 1.22e-29 8i0r:K, 8i0s:K, 8i0t:K, 5z56:M, 5z58:M
2 6ff4:t 172 45 0.9783 0.2616 1.0000 5.34e-29 8ch6:Z, 6ff7:t, 7qtt:Z
3 7dco:M 176 41 0.5870 0.1534 0.6585 1.85e-17 5gm6:a
4 1m9o:A 40 25 0.2174 0.2500 0.4000 0.002
5 1rgo:A 70 26 0.1957 0.1286 0.3462 0.006
6 1rgo:A 70 25 0.1957 0.1286 0.3600 0.014
7 5elh:A 142 29 0.3261 0.1056 0.5172 0.031 5elh:B
8 7k95:A 53 23 0.2826 0.2453 0.5652 0.060 7zyh:A, 7zyh:D, 7zyh:G, 7zyh:J
9 6pmg:X 35 27 0.2391 0.3143 0.4074 0.075
10 6nzl:A 78 25 0.1957 0.1154 0.3600 0.16
11 6nzl:A 78 29 0.2174 0.1282 0.3448 0.24
12 8y6o:V 101 36 0.2826 0.1287 0.3611 0.63
13 2cqe:A 98 21 0.2609 0.1224 0.5714 0.93
14 2cqe:A 98 22 0.1957 0.0918 0.4091 8.5
15 2d9m:A 69 36 0.3043 0.2029 0.3889 1.7
16 6uej:A 212 25 0.2174 0.0472 0.4000 2.1 6uei:A
17 3u9g:A 217 28 0.2609 0.0553 0.4286 2.8 6l1w:A
18 8pj1:s 159 16 0.1957 0.0566 0.5625 2.9 7a09:4, 8oz0:U, 8ppl:Is, 7qp6:s, 6ybv:s, 6zmw:s, 6zp4:4
19 2fc6:A 50 30 0.2174 0.2000 0.3333 3.4
20 1w66:A 218 12 0.1522 0.0321 0.5833 3.7
21 3r4i:A 321 15 0.1522 0.0218 0.4667 3.7 3r4i:B, 3r4i:C, 3r4i:D, 3r4i:E, 3r4i:F
22 6fdz:U 265 28 0.2391 0.0415 0.3929 4.7 6fdy:U
23 2x7k:A 164 25 0.1739 0.0488 0.3200 5.0
24 4zw2:A 319 21 0.1957 0.0282 0.4286 6.5
25 1vyt:A 273 21 0.1957 0.0330 0.4286 6.5
26 1vyt:B 294 21 0.1957 0.0306 0.4286 6.5
27 4izg:A 369 23 0.1522 0.0190 0.3043 7.4 4e8g:A, 4e8g:B, 4izg:B, 4j1o:A, 4j1o:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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