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BioLiP
>protein
RVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGEGYSLVVRVVANDRSGL
LRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLH

The query sequence (length=143) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5kpv:33 675 143 1.0000 0.2119 1.0000 5.43e-96 5kps:A, 5kpw:33, 5kpx:33
2 5iqr:8 615 145 0.9860 0.2293 0.9724 7.10e-93
3 5l3p:z 545 82 0.5455 0.1431 0.9512 5.15e-45
4 6htq:x 341 148 0.3776 0.1584 0.3649 1.06e-28
5 8fr8:I 150 145 0.3916 0.3733 0.3862 3.07e-27
6 7qpr:D 689 60 0.1538 0.0319 0.3667 3.82e-05 7qpr:A, 7qpr:B, 7qpr:C, 7qps:A
7 1y7p:B 217 26 0.0839 0.0553 0.4615 0.17 1y7p:A, 1y7p:C
8 5kyn:A 730 28 0.0769 0.0151 0.3929 2.4 3efo:A, 3eg9:A, 3egd:A, 3egx:A, 8hr0:A, 5kyn:B, 5kyu:A, 5kyw:A, 5kyx:A, 5kyy:A, 2nup:A, 2nut:A, 5vne:A, 5vnf:A, 5vng:A, 5vnh:A, 5vni:A, 5vnj:A, 5vnk:A, 5vnl:A, 5vnm:A, 5vnn:A, 5vno:A
9 3pjz:A 468 24 0.0909 0.0278 0.5417 2.7 4j9u:C, 4j9u:D, 3pjz:B
10 6b27:A 118 20 0.0490 0.0593 0.3500 4.2 6b27:B, 6b27:C, 6b27:D, 6b27:E, 6b27:F
11 7w61:A 249 39 0.1119 0.0643 0.4103 5.5
12 7x53:A 406 37 0.0909 0.0320 0.3514 6.8 7x53:B
13 6x89:S1 688 62 0.1329 0.0276 0.3065 9.1 8e73:S1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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