Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RVVRSAKDKRFEELTNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNELWEDKEG
KKKMNKNNAKALSTLRQKIRKYNKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQIAAENNLGEGVIVKIKF
NIIASLYDYNPNLATYMKPEMWGKCLDCINELMDILFANPNIFVGENILEESENLHNADQPLRVRGCILTLVERMDEEFT
KIMQNTDPHSQEYVEHLKDEAQVCAIIERVQRYLEEKGTTEEVCRIYLLRILHTYYKFDYKAHSAVLMERLCKYIYAKDR
TDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSG
RAKELLGQGLNQEQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHERMISKQFHHQLRVGERQPLLGPPESM
REHVVAASKAMKMGDWKTCHSFIINEKMNGKVWDLFPEADKVRTMLVRKIQEESLRTYLFTYSSVYDSISMETLSDMFEL
DLPTVHSIISKMIINEELMASLDQPTQTVVMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQ

The query sequence (length=625) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7a09:C 633 633 1.0000 0.9874 0.9874 0.0 8xxn:3C, 6zon:C, 6zp4:C, 6zvj:C
2 8oz0:J 687 668 1.0000 0.9098 0.9356 0.0 8pj2:y, 8pj3:y, 7qp7:y
3 8pj1:y 731 553 0.8320 0.7114 0.9403 0.0 6fec:2, 8pj4:y, 8pj5:y, 8pj6:y, 8ppl:Iy, 7qp6:y, 8rg0:y, 6w2s:2, 6w2t:2, 6ybw:y, 6zmw:y
4 8pj1:y 731 118 0.1728 0.1477 0.9153 2.84e-51 6fec:2, 8pj4:y, 8pj5:y, 8pj6:y, 8ppl:Iy, 7qp6:y, 8rg0:y, 6w2s:2, 6w2t:2, 6ybw:y, 6zmw:y
5 6gsn:q 675 671 0.3056 0.2830 0.2846 2.40e-76 8cah:q, 8cas:q, 6gsm:q, 8s8e:p, 4uer:c, 6zce:q, 6zu9:q
6 3jap:p 634 572 0.2688 0.2650 0.2937 5.59e-68 6fyx:q, 6fyy:q
7 7ase:C 696 472 0.1776 0.1595 0.2352 6.40e-28
8 7ntg:A 402 77 0.0352 0.0547 0.2857 1.9
9 5veu:C 469 82 0.0304 0.0405 0.2317 2.4 6mjm:A, 8sg5:A, 8sg5:B, 8sg5:C, 8sg5:D, 8sg5:E, 8sg5:F, 8sg5:G, 7sv2:A, 7sv2:B, 7sv2:C, 5veu:A, 5veu:B, 5veu:D, 5veu:F, 5veu:G, 5veu:H, 5veu:I, 5veu:J, 5veu:K
10 7kyj:B 194 32 0.0192 0.0619 0.3750 2.6 6edd:A, 6edd:B, 6edv:A, 7kpp:A, 7kpp:B, 7kps:A, 7kps:B, 7kye:A, 7kyj:A
11 5veu:L 448 82 0.0304 0.0424 0.2317 2.6 7lad:A, 8sg5:H, 7sv2:D, 5veu:E
12 8dh1:L 702 23 0.0208 0.0185 0.5652 3.7
13 5ubv:A 244 58 0.0304 0.0779 0.3276 4.0 5ubv:B
14 8dh4:I 821 28 0.0208 0.0158 0.4643 5.3 8dh0:J
15 1mpa:H 225 48 0.0224 0.0622 0.2917 7.5 2mpa:H
16 6thh:C 816 58 0.0288 0.0221 0.3103 9.3 6yes:A
17 7cb9:A 466 82 0.0352 0.0472 0.2683 9.8 5ylw:A, 5ym3:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218