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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNNHLIKRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRI
LIPSATNYQDVFNLNSMMQAEQLIFHLIYNNENAVNTICDNLKYTEGFTSNTQRVIHSVYATTKSILDTTNPNTFCSRVS
RDELRFFDVTNARALRGGAGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRFRNCATCIIDETGLVASVPDGPELYNPI
RSSDIMRSQPNRLQIRNVLKFEGDTRELDRTLSGYEEYPTYVPLFLGYQIINSENNFLRNDFIPRANP

The query sequence (length=308) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8taf:J 310 308 1.0000 0.9935 1.0000 0.0 8taf:L, 8taf:M, 8taf:N, 8taf:O, 8taf:P, 8taf:Q, 8taf:R
2 6ghs:A 285 106 0.0812 0.0877 0.2358 1.2
3 7xn7:W 533 98 0.0682 0.0394 0.2143 2.2 7xse:W, 7xsx:W, 7xt7:W, 7xtd:W, 7xti:W
4 3p19:A 239 84 0.0747 0.0962 0.2738 4.6 3p19:B, 3p19:C, 3p19:D
5 1lxy:A 409 66 0.0552 0.0416 0.2576 5.9 1lxy:B, 1s9r:A, 1s9r:B
6 6d03:C 679 165 0.1071 0.0486 0.2000 6.9 1a8e:A, 1a8f:A, 1b3e:A, 8brc:A, 6ctc:A, 6d03:D, 6d04:C, 6d04:D, 6d05:C, 6d05:D, 1d3k:A, 1d4n:A, 1dtg:A, 5dyh:A, 5dyh:B, 7ffm:A, 7ffu:A, 3fgs:A, 1fqe:A, 1fqf:A, 4h0w:A, 5h52:A, 6jas:A, 1jqf:A, 1n7w:A, 1n7x:A, 1n84:A, 2o7u:B, 2o7u:A, 2o7u:C, 2o7u:D, 2o7u:E, 2o7u:F, 2o7u:G, 2o7u:H, 2o7u:I, 2o84:X, 1oqg:A, 1oqh:A, 3qyt:A, 1ryo:A, 6soy:C, 6soz:C, 1suv:C, 1suv:D, 6uj6:A, 3v83:A, 3v83:B, 3v83:C, 3v83:D, 3v83:E, 3v83:F, 3ve1:B, 3ve1:D, 5wtd:A, 4x1b:A, 4x1d:A, 4x1d:B, 5x5p:A, 5y6k:A
7 3s9m:C 517 165 0.1071 0.0638 0.2000 7.0 3s9l:C, 3s9n:C
8 7kvy:A 633 31 0.0422 0.0205 0.4194 7.6 7kcp:A, 7kq6:A, 7kq6:B, 7kq6:C, 7kqz:A, 7l3p:A, 7l3q:A, 7l3q:B, 7l3q:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218