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BioLiP
>protein
RVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3rkq:A 58 53 1.0000 0.9138 1.0000 1.35e-32 3rkq:B
2 5flv:M 229 52 0.9811 0.2271 1.0000 9.76e-31 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
3 1nk2:P 77 53 0.7736 0.5325 0.7736 2.11e-26 1nk3:P
4 1ig7:A 58 53 0.5849 0.5345 0.5849 7.37e-16
5 4rdu:D 62 53 0.5472 0.4677 0.5472 1.19e-14 4rdu:A, 4xrs:I, 4xrs:G
6 3a01:A 78 51 0.5472 0.3718 0.5686 2.62e-14 3a01:E
7 2me6:A 71 53 0.5472 0.4085 0.5472 4.96e-14
8 8pna:A 67 53 0.5472 0.4328 0.5472 1.33e-13 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
9 1zq3:P 68 53 0.4906 0.3824 0.4906 1.28e-12
10 2h1k:B 60 53 0.4906 0.4333 0.4906 4.16e-12 2h1k:A
11 8eml:A 58 53 0.5094 0.4655 0.5094 5.58e-12 8eml:B
12 1b72:A 68 53 0.5094 0.3971 0.5094 7.36e-12
13 1jgg:A 57 53 0.4340 0.4035 0.4340 1.34e-10 1jgg:B
14 6es3:K 72 53 0.4528 0.3333 0.4528 1.79e-10 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
15 4rbo:A 55 52 0.4528 0.4364 0.4615 2.27e-10 4rbo:D
16 2r5z:A 75 53 0.4717 0.3333 0.4717 1.06e-09 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
17 4uus:A 67 53 0.4528 0.3582 0.4528 1.07e-09 4uus:E
18 1ahd:P 68 53 0.4717 0.3676 0.4717 1.07e-09
19 1puf:A 77 53 0.4717 0.3247 0.4717 2.45e-09 2lp0:A
20 4cyc:A 66 53 0.4528 0.3636 0.4528 2.52e-09 1b8i:A
21 5zjr:A 64 53 0.5094 0.4219 0.5094 3.89e-09 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
22 6m3d:C 108 53 0.4528 0.2222 0.4528 3.92e-09 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
23 6m3d:C 108 48 0.4151 0.2037 0.4583 6.10e-09 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
24 5eea:G 63 53 0.3585 0.3016 0.3585 6.73e-09 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
25 2ld5:A 67 53 0.3774 0.2985 0.3774 8.58e-09
26 1fjl:A 65 51 0.3962 0.3231 0.4118 6.28e-08 1fjl:B, 1fjl:C
27 8osb:E 62 51 0.4151 0.3548 0.4314 1.74e-07
28 3a01:F 61 51 0.3774 0.3279 0.3922 2.39e-07 3a01:B, 3lnq:A
29 3cmy:A 60 49 0.3962 0.3500 0.4286 2.49e-07
30 2lkx:A 68 51 0.3774 0.2941 0.3922 3.45e-07
31 4qtr:C 57 53 0.4340 0.4035 0.4340 2.90e-06 4qtr:A, 4qtr:B, 4qtr:D
32 8ejo:A 56 49 0.3019 0.2857 0.3265 5.24e-06 8ejo:B, 8ejp:A, 8ejp:B
33 1le8:A 53 48 0.3208 0.3208 0.3542 3.61e-05 1akh:A, 1yrn:A
34 6e8c:A 135 51 0.3208 0.1259 0.3333 3.10e-04 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
35 6e8c:A 135 50 0.2642 0.1037 0.2800 0.012 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
36 9b8u:B 66 47 0.2830 0.2273 0.3191 5.63e-04 9b8u:A, 9b8u:C, 9b8u:D
37 4egc:A 539 42 0.3019 0.0297 0.3810 0.001
38 5wc9:A 136 53 0.3774 0.1471 0.3774 0.002 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
39 5hod:A 61 53 0.3396 0.2951 0.3396 0.008 5hod:D
40 7xrc:C 134 42 0.3396 0.1343 0.4286 0.029 2xsd:C
41 1gt0:C 137 42 0.2453 0.0949 0.3095 0.17 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
42 8bx1:A 127 44 0.2830 0.1181 0.3409 0.41
43 8ik5:C 67 27 0.2264 0.1791 0.4444 0.52 8ike:C, 8ilw:C
44 3l1p:A 147 44 0.2830 0.1020 0.3409 0.73 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
45 1lfu:P 82 29 0.2075 0.1341 0.3793 0.89 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
46 7nsn:A 1371 38 0.2642 0.0102 0.3684 1.6 7nsn:B
47 1mnm:C 77 53 0.3208 0.2208 0.3208 2.0 1mnm:D
48 1akh:B 78 53 0.3208 0.2179 0.3208 2.2 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
49 8g8e:X 140 42 0.2830 0.1071 0.3571 2.3 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
50 4d82:B 274 30 0.1887 0.0365 0.3333 2.5 4d81:A, 4d82:A, 4d82:C
51 3baz:A 311 22 0.2264 0.0386 0.5455 2.7
52 8ix8:A 264 26 0.2075 0.0417 0.4231 3.1 8ixx:A, 8iy4:A
53 3d1n:I 150 49 0.2453 0.0867 0.2653 3.8 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
54 4xrm:B 64 29 0.2453 0.2031 0.4483 5.8 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
55 6ts2:D 1123 44 0.2264 0.0107 0.2727 9.7 6ts2:A, 6ts2:B, 6ts2:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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