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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLSQDVPWKQRTDITYQQPRLTAWYGELPYTYSRITMEPNPH
WHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVCWHSDDEPSLGRSPIIASLSFGATRTFEMRKKPERVKIPLDHGTL
LIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYP

The query sequence (length=195) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8jnr:A 211 210 1.0000 0.9242 0.9286 1.19e-141 2iuw:A, 8jnk:A, 8jnk:C, 8jnk:E, 8jnk:G, 8jnr:E, 8jnr:D
2 8jnr:C 184 195 0.9333 0.9891 0.9333 1.16e-133
3 3h8o:A 206 181 0.3487 0.3301 0.3757 4.04e-30 3btx:A, 3bty:A, 3btz:A, 3bu0:A, 3buc:A, 3h8r:A, 3h8x:A, 4mg2:A, 4mgt:A, 3rzg:A, 3rzh:A, 3rzj:A, 3rzk:A, 3rzl:A, 3rzl:D, 3rzm:A, 3s57:A, 3s5a:A
4 5ylb:A 187 109 0.1487 0.1551 0.2661 2.96e-04 5yl6:A
5 3bfq:G 132 122 0.1436 0.2121 0.2295 0.21 3bfw:A, 3bfw:C, 5iqm:G, 5iqm:A, 5iqn:A, 5iqn:G, 5iqo:A, 5iqo:C
6 7zay:A 566 57 0.0667 0.0230 0.2281 1.0 7scj:A
7 5mza:B 186 46 0.0769 0.0806 0.3261 1.3
8 2g37:B 300 45 0.0769 0.0500 0.3333 4.2 2ekg:A, 2ekg:B, 2g37:A, 5m42:A
9 6vgs:BBB 543 61 0.0872 0.0313 0.2787 5.2 6vgs:AAA, 6vgs:CCC, 6vgs:DDD
10 7uqx:A 583 57 0.0564 0.0189 0.1930 8.3 7uqy:A
11 7opl:A 1070 96 0.1077 0.0196 0.2188 8.5 6as7:A, 9c8v:C, 8d96:C, 8d9d:C, 5exr:C, 5exr:G, 5iud:A, 5iud:D, 5iud:G, 5iud:J, 7n2m:A, 4q5v:A, 4q5v:E, 4qcl:A, 8qj7:A, 7u5c:C, 8vy3:C, 4y97:B, 4y97:D, 4y97:F, 4y97:H
12 8ag6:B 975 37 0.0615 0.0123 0.3243 9.0 2o8b:B, 2o8c:B, 2o8d:B, 2o8e:B, 2o8f:B
13 8oh5:B 584 27 0.0615 0.0205 0.4444 10.0 8oh5:E, 8oh5:H, 8oh5:K, 8oh9:B, 8oh9:E, 8oh9:H, 8oh9:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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