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BioLiP
>protein
RVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFE

The query sequence (length=50) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3gv6:A 56 50 1.0000 0.8929 1.0000 2.27e-30 3i90:A, 3i90:B
2 5eq0:A 55 50 0.8400 0.7636 0.8400 4.35e-27 3i91:A
3 5epl:B 58 49 0.7400 0.6379 0.7551 4.41e-23 5epl:A
4 5ejw:A 80 50 0.7200 0.4500 0.7200 5.20e-23 5epj:A, 2kvm:A, 2l12:A, 2l1b:A, 4mn3:A, 8sii:A, 8sii:B, 6v2r:A, 4x3k:A, 4x3k:B, 4x3s:B, 4x3s:A, 4x3t:A, 4x3t:B, 4x3t:C, 4x3t:D, 4x3t:E, 4x3t:F, 4x3u:A, 4x3u:B
5 5epk:A 54 50 0.6400 0.5926 0.6400 1.33e-21 3h91:A, 3h91:B
6 1pfb:A 55 49 0.6200 0.5636 0.6327 2.47e-18 1pdq:A
7 6asz:A 53 48 0.5000 0.4717 0.5208 6.03e-13 6at0:A, 1kna:A, 1kne:A, 6mha:A, 1q3l:A
8 2rvn:A 83 47 0.4200 0.2530 0.4468 4.50e-12
9 3tzd:A 58 47 0.4400 0.3793 0.4681 5.50e-12 3dm1:A, 3dm1:C, 3dm1:G, 3dm1:E, 2l11:A
10 1guw:A 73 41 0.4400 0.3014 0.5366 1.44e-11 6d07:A, 6d07:B, 6d08:A, 6d08:B
11 8uxq:A 170 44 0.4200 0.1235 0.4773 4.05e-11 3fdt:A
12 7vyw:A 47 38 0.3600 0.3830 0.4737 1.13e-09
13 6v41:AAA 61 42 0.3400 0.2787 0.4048 3.83e-08
14 7n27:A 57 43 0.3600 0.3158 0.4186 4.14e-08 7n27:D, 7n27:B, 7n27:C, 7n27:E, 7n27:F
15 7vrf:A 61 49 0.4000 0.3279 0.4082 1.44e-07 7vrf:B
16 4u68:A 64 49 0.3800 0.2969 0.3878 1.85e-07 4quf:A, 4quf:B, 4quf:C, 4quf:D, 4quf:E, 4quf:F, 4u68:B, 4u68:C
17 6v2d:G 64 41 0.3600 0.2812 0.4390 3.27e-07 5jjz:A, 7slw:A, 7slw:B, 7slw:C, 7slw:D, 7slw:E, 7slw:F, 8sp6:A, 8sp6:B, 8sp6:C, 8sp6:D, 8sp6:E, 8sp6:F, 6v2d:I, 6v2d:K, 6v2d:A, 6v2d:C, 6v2d:E, 6v2h:A, 6v2h:C, 6v2h:E, 6v2h:G, 6v2h:I, 6v2h:K, 6v3n:A, 6v3n:B, 6v8w:A, 6v8w:B, 6v8w:C, 6v8w:D, 6v8w:E, 6v8w:F, 6v8w:G, 6v8w:H, 6v8w:I, 6v8w:J, 6v8w:K, 6v8w:L, 6v8w:M, 6v8w:N, 6v8w:O, 6v8w:P, 6v8w:Q, 6v8w:R, 6v8w:S, 6v8w:T, 6v8w:U, 6v8w:V, 6v8w:W, 6v8w:X, 6v8w:Y, 6v8w:Z
18 3qo2:A 61 45 0.3200 0.2623 0.3556 3.44e-06 7m5u:A, 3qo2:D, 3qo2:B, 3qo2:C, 3r93:A, 3r93:D, 3r93:B, 3r93:C, 3svm:A, 6v2s:A, 6v2s:B
19 2rsn:A 75 41 0.3400 0.2267 0.4146 1.66e-05 3g7l:A
20 6s47:Bi 952 50 0.3400 0.0179 0.3400 2.56e-05
21 5e4w:C 105 48 0.4000 0.1905 0.4167 7.49e-05 5e4w:D, 5e4x:A
22 5e4w:C 105 20 0.1600 0.0762 0.4000 8.5 5e4w:D, 5e4x:A
23 2b2w:A 177 25 0.2800 0.0791 0.5600 8.67e-05 5afw:A, 2b2t:A, 2b2u:A, 2b2v:A, 4nw2:A, 4nw2:C, 4o42:A
24 4fsx:A 680 29 0.2200 0.0162 0.3793 0.027 4fsx:B, 4ft2:B, 4ft2:A
25 7ubu:A 708 29 0.2200 0.0155 0.3793 0.029 4ft4:A, 4ft4:B
26 6ryr:W 708 25 0.1800 0.0127 0.3600 0.084 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
27 6q3m:C 219 25 0.1800 0.0411 0.3600 0.14 6q3m:A, 6q3m:B
28 6guu:B 204 25 0.2000 0.0490 0.4000 0.37 6guu:A
29 3oa6:A 84 37 0.2400 0.1429 0.3243 1.8 3oa6:B
30 7jqq:A 327 28 0.2400 0.0367 0.4286 3.4 7jqq:B, 7jqq:C, 7jqq:D, 7jqq:E
31 9gd1:W 849 25 0.1800 0.0106 0.3600 4.4
32 9gd1:W 849 26 0.2000 0.0118 0.3846 4.9
33 5wyr:B 248 46 0.2400 0.0484 0.2609 6.1 6afk:A, 6afk:B, 6jki:A, 6jki:B, 6joe:A, 6joe:B, 5wyq:A, 5wyq:B, 5wyr:A, 5zhm:A, 5zhm:B, 5zhn:A, 5zhn:B
34 7tn2:W 895 26 0.2000 0.0112 0.3846 7.4 9gd2:W, 9gd3:W
35 7tn2:W 895 25 0.1800 0.0101 0.3600 9.0 9gd2:W, 9gd3:W
36 6g0l:M 855 26 0.2000 0.0117 0.3846 7.5 7nkx:W, 5o9g:W
37 6g0l:M 855 26 0.1800 0.0105 0.3462 9.0 7nkx:W, 5o9g:W
38 6ftx:W 878 26 0.2000 0.0114 0.3846 7.9 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
39 6ftx:W 878 26 0.1800 0.0103 0.3462 9.3 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
40 3ui2:A 234 20 0.1600 0.0342 0.4000 8.9 3dep:A, 2hug:A
41 8snl:A 656 27 0.1800 0.0137 0.3333 9.9 2a8h:A, 2a8h:B, 3b92:A, 1bkc:A, 1bkc:C, 1bkc:E, 1bkc:I, 3cki:A, 2ddf:A, 2ddf:B, 3e8r:A, 3e8r:B, 3edz:A, 3edz:B, 3ewj:A, 3ewj:B, 2fv5:A, 2fv5:B, 2fv9:A, 2fv9:B, 3g42:A, 3g42:B, 3g42:C, 3g42:D, 2i47:A, 2i47:B, 2i47:C, 2i47:D, 3kmc:A, 3kmc:B, 3kme:A, 3kme:B, 3l0t:A, 3l0t:B, 3l0v:A, 3l0v:B, 3le9:A, 3le9:B, 3lea:A, 3lea:B, 3lgp:A, 3lgp:B, 3o64:A, 3o64:B, 2oi0:A, 8snm:B, 8snn:A, 8sno:A, 1zxc:A, 1zxc:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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