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BioLiP
>protein
RVARLEKKVSALEKKVACLEKEVARLKKLVG

The query sequence (length=31) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3w8v:A 32 31 0.9677 0.9375 0.9677 5.16e-12 3w8v:B, 3w92:A, 3w92:B, 3w92:C, 3w93:A, 3w93:B, 3w93:C
2 1ysa:C 57 31 0.6129 0.3333 0.6129 0.001 1dgc:A, 2dgc:A, 1ysa:D
3 4etp:B 287 27 0.4516 0.0488 0.5185 0.002
4 4etp:B 287 20 0.3226 0.0348 0.5000 3.1
5 5apw:B 64 27 0.5806 0.2812 0.6667 0.006
6 5apw:B 64 31 0.5484 0.2656 0.5484 0.008
7 1llm:C 87 27 0.5806 0.2069 0.6667 0.007 1llm:D
8 3i5c:B 198 30 0.5806 0.0909 0.6000 0.014 3i5c:A, 1ij0:A, 1ij0:B, 1ij0:C, 1ij1:A, 1ij1:B, 1ij1:C, 3k7z:A, 3k7z:B, 1rb4:A, 1rb4:B, 1swi:C, 6xne:C
9 1fav:A 78 27 0.3548 0.1410 0.4074 0.044 6j5e:G, 6tvq:AaA, 6tvu:AaA, 6tvw:CCC, 3vgx:C, 3vu5:A, 3vu6:A, 3w19:C, 5yb4:E, 5yb4:F, 5yb4:D
10 4u5t:A 37 31 0.5161 0.4324 0.5161 0.071
11 4u5t:A 37 27 0.4194 0.3514 0.4815 3.4
12 1czq:A 45 30 0.3871 0.2667 0.4000 0.13 1gzl:A, 1gzl:B, 3l35:A, 3l35:C, 3l35:B, 3l36:A, 3l37:A, 3mgn:D, 3mgn:F, 3mgn:A, 3mgn:C, 3mgn:E, 3mgn:B, 6psa:A, 2q3i:A, 2r3c:A, 2r3c:B, 2r5b:A, 2r5b:C, 2r5b:B, 2r5d:A, 2r5d:C, 2r5d:B
13 3crp:B 34 31 0.5161 0.4706 0.5161 0.31 2b1f:A, 2b1f:C, 3crp:C
14 5uxt:A 33 26 0.5161 0.4848 0.6154 0.73 5uxt:C
15 5uxt:A 33 23 0.4194 0.3939 0.5652 4.1 5uxt:C
16 1mwq:A 100 20 0.3226 0.1000 0.5000 2.0
17 1uo4:B 31 28 0.3548 0.3548 0.3929 2.1 1uo5:A
18 4g1e:A 964 26 0.4194 0.0135 0.5000 2.2 5ffg:A, 5ffo:A, 5ffo:E, 4g1m:A, 3ije:A, 1jv2:A, 1l5g:A, 1m1x:A, 6mk0:A, 4mmx:A, 4mmy:A, 4mmz:A, 6msl:A, 6msu:A, 6naj:A, 5nem:A, 5ner:A, 5net:A, 4o02:A, 6om1:A, 6om1:C, 6om1:E, 6om1:G, 6om2:A, 6om2:C, 8tcf:A, 8tcg:A, 1u8c:A, 6uja:A, 6ujb:A, 6ujc:A, 4um8:C, 4um8:A, 4um9:A, 4um9:C, 8vs6:A, 8vsd:A, 7y1t:A
19 8rve:i 246 18 0.3548 0.0447 0.6111 3.3 8rve:j
20 6egl:A 36 27 0.4194 0.3611 0.4815 3.5 6egm:A, 6egn:C, 6egn:B, 6ego:A, 6egp:A, 5kb0:A, 5kb1:A, 5kb2:A, 6mcd:A, 7n2y:A, 7n2z:A
21 6egl:A 36 24 0.4194 0.3611 0.5417 4.5 6egm:A, 6egn:C, 6egn:B, 6ego:A, 6egp:A, 5kb0:A, 5kb1:A, 5kb2:A, 6mcd:A, 7n2y:A, 7n2z:A
22 8hw0:A 329 31 0.3226 0.0304 0.3226 6.6
23 1g6u:A 48 26 0.3871 0.2500 0.4615 7.8 1g6u:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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