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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RTYRVGDIVDIKVNGAVQKGMPHKFYHGKTGVVYNVTKSAVGVIVYKRVKHRYIEKRINVRIEHVKPSRSREDFLRRVKE
NAELKKKAKAEGVPVQLKRQPAMPREAHTVSIADNKPVTLAPVAYE

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7olc:LT 158 126 1.0000 0.7975 1.0000 2.78e-88 8i9p:LT, 8i9r:LT, 8i9t:LT, 8i9v:LT, 8i9w:LT, 8i9x:LT, 8i9y:LT, 8i9z:LT, 8ia0:LT, 7old:LT, 8oo0:LT, 8pv1:LT, 8pv2:LT, 8pv3:LT, 8pv4:LT, 8pv5:LT, 8pv6:LT, 8pv7:LT, 8pv8:LT, 8pvk:LT, 8pvl:LT, 7z3n:LT, 7z3o:LT
2 7r81:V1 159 126 0.8095 0.6415 0.8095 7.34e-74
3 8eui:T 159 126 0.7063 0.5597 0.7063 7.20e-61 8eug:T
4 8hfr:Tl 160 126 0.6667 0.5250 0.6667 5.30e-58 8aaf:G, 8agt:G, 8agu:G, 8agv:G, 8agw:G, 8agx:G, 8agz:G, 5apn:T, 5apo:T, 7azy:u, 7b7d:Lp, 8bip:LT, 8bjq:LT, 8bn3:N1, 8bqd:BJ, 8bqx:BJ, 7bt6:T, 7btb:T, 8ccs:F, 8cdl:F, 8cdr:F, 8ceh:F, 8cf5:F, 8cg8:F, 8cgn:F, 8civ:F, 8cku:F, 8cmj:F, 5dat:N1, 5dat:n1, 5dc3:N1, 5dc3:n1, 5dge:N1, 5dge:n1, 5dgf:N1, 5dgf:n1, 5dgv:N1, 5dgv:n1, 6elz:T, 8eub:AT, 8evp:AT, 8evq:AT, 8evr:AT, 8evs:AT, 8evt:AT, 8ewb:AT, 8ewc:AT, 5fci:N1, 5fci:n1, 5fcj:N1, 5fcj:n1, 6ft6:T, 5gak:V, 6gq1:T, 6gqb:T, 6gqv:T, 5h4p:T, 6hd7:V, 6hhq:2, 6hhq:CV, 5i4l:N1, 5i4l:n1, 6i7o:BJ, 6i7o:YJ, 5it7:TT, 3j6x:61, 3j6y:61, 3j77:71, 3j78:71, 3jct:T, 5jcs:T, 5juo:Y, 5jup:Y, 5jus:Y, 5jut:Y, 5juu:Y, 8k2d:LT, 8k82:LT, 5lyb:N1, 5lyb:n1, 5m1j:T5, 6m62:T, 5mc6:BJ, 5mei:2, 5mei:CV, 7mpi:AT, 7mpj:AT, 6n8j:T, 6n8k:T, 6n8l:T, 6n8m:g, 6n8n:g, 6n8o:g, 7n8b:AT, 7nac:T, 5ndg:N1, 5ndg:n1, 5ndv:N1, 5ndv:n1, 5ndw:N1, 5ndw:n1, 7nrc:LV, 7nrd:LV, 5obm:N1, 5obm:n1, 7of1:T, 7oh3:T, 7ohq:T, 7oht:T, 6oig:T, 5on6:2, 5on6:CV, 7osa:eL21, 7osm:eL21, 8p8m:QT, 8p8n:QT, 8p8u:QT, 8pfr:QT, 6q8y:BJ, 6qik:T, 6qt0:T, 6qtz:T, 7r7a:T, 6r84:V, 6r86:V, 6r87:V, 6ri5:T, 7rr5:LT, 6rzz:T, 6s05:T, 6s47:AV, 6snt:z, 6sv4:BJ, 6sv4:YJ, 6sv4:ZJ, 6t4q:LT, 5t62:g, 5t6r:g, 6t7i:LT, 6t7t:LT, 6t83:Ty, 6t83:E, 5tbw:2, 5tbw:CV, 6tb3:BJ, 5tga:N1, 5tga:n1, 5tgm:N1, 5tgm:n1, 6tnu:BJ, 7too:AL21, 7top:AL21, 4u3m:N1, 4u3m:n1, 4u3n:N1, 4u3n:n1, 4u3u:N1, 4u3u:n1, 4u4n:N1, 4u4n:n1, 4u4o:N1, 4u4o:n1, 4u4q:N1, 4u4q:n1, 4u4r:N1, 4u4r:n1, 4u4u:N1, 4u4u:n1, 4u4y:N1, 4u4y:n1, 4u4z:N1, 4u4z:n1, 4u50:N1, 4u50:n1, 4u51:N1, 4u51:n1, 4u52:N1, 4u52:n1, 4u53:N1, 4u53:n1, 4u55:N1, 4u55:n1, 4u56:N1, 4u56:n1, 4u6f:N1, 4u6f:n1, 7ug6:T, 7uoo:T, 7uqb:T, 7uqz:T, 6uz7:AT, 7v08:T, 4v4b:BQ, 4v6i:BU, 4v7f:T, 4v7h:BQ, 4v7r:BT, 4v7r:DT, 4v88:BT, 4v88:DT, 4v8t:T, 4v8y:BT, 4v8z:BT, 4v91:T, 6woo:T, 6xiq:T, 6xir:T, 8y0u:LT, 6ylg:T, 6ylh:T, 6ylx:T, 6yly:T, 7z34:T, 6z6j:LT, 6z6k:LT, 7zpq:BS, 7zrs:BS, 7zs5:BU, 7zuw:BS, 7zux:ES, 7zw0:LW
5 8c3a:2 159 126 0.6508 0.5157 0.6508 8.76e-55 8c3a:BO, 8cq7:2, 8cq7:BO, 8cqw:2, 8cqw:BO, 8cre:2, 8cre:BO, 8oeq:2, 8oeq:BO, 7pzy:2, 7q08:2, 7q0f:2, 7q0p:2, 7q0r:2, 8q5i:2
6 7cpu:LT 160 126 0.6429 0.5062 0.6429 1.37e-50 7a01:72, 8a3d:N, 5aj0:AT, 8b5l:T, 8b6c:T, 9bdl:AL21, 9bdn:AL21, 9bdp:AL21, 7bhp:LT, 8bhf:G1, 8bpo:S2, 8btk:BT, 7cpv:LT, 4d5y:T, 4d67:T, 6d90:T, 6d9j:T, 9f1b:BT, 9f1c:BT, 9f1d:BT, 7f5s:LT, 8fkp:LE, 8fkq:LE, 8fkr:LE, 8fks:LE, 8fkt:LE, 8fku:LE, 8fkv:LE, 8fkw:LE, 8fkx:LE, 8fky:LE, 8fkz:LE, 8fl0:LE, 8fl2:LE, 8fl3:LE, 8fl4:LE, 8fl6:LE, 8fl7:LE, 8fl9:LE, 8fla:LE, 8flb:LE, 8flc:LE, 8fld:LE, 8fle:LE, 8flf:LE, 6frk:T, 6ftg:T, 6fti:T, 6ftj:T, 8g5y:LT, 8g5z:LT, 8g60:LT, 8g61:LT, 8g6j:LT, 8glp:LT, 6gz3:AT, 6gz4:AT, 6gz5:AT, 6hcf:T3, 6hcj:T3, 6hcm:T3, 6hcq:T3, 8idt:c, 8idy:c, 8ie3:c, 8ifd:2N, 8ife:2N, 8ine:c, 8inf:c, 8ink:T, 6ip5:2N, 6ip6:2N, 6ip8:2N, 8ipd:T, 8ipx:T, 8ipy:T, 8ir1:c, 8ir3:c, 3j7o:T, 3j7p:T, 3j7q:T, 3j7r:T, 3j92:T, 3jag:T, 3jah:T, 3jai:T, 3jaj:T, 3jan:T, 8jdj:Y, 8jdk:Y, 8jdl:Y, 8jdm:Y, 8k2c:LT, 5lks:LT, 6lqm:c, 6lsr:c, 6lss:c, 7ls1:N2, 7ls2:N2, 6lu8:c, 5lzs:T, 5lzt:T, 5lzu:T, 5lzv:T, 5lzw:T, 5lzx:T, 5lzy:T, 5lzz:T, 7mdz:T, 6mtb:T, 6mtc:T, 6mtd:T, 6mte:T, 7nfx:T, 7nwg:T3, 7nwh:T, 7nwi:T, 7o7y:BT, 7o7z:BT, 7o80:BT, 7o81:BT, 7obr:T, 8ohd:LT, 8oj0:LT, 8oj5:LT, 8oj8:LT, 6ole:U, 6olf:U, 6olg:AT, 6oli:U, 6olz:AT, 6om0:U, 6om7:U, 7ow7:N, 7oyd:T, 8p2k:BT, 6p5i:AT, 6p5j:AT, 6p5k:AT, 6p5n:AT, 8q7z:BT, 8q87:BT, 8qfd:T, 7qgg:U, 8qoi:LT, 7qvp:LT, 7qvp:MT, 7qwq:T, 7qwr:T, 7qws:T, 6qzp:LT, 6r5q:T, 6r6g:T, 6r6p:T, 6r7q:T, 8rjb:T, 8rjc:T, 8rjd:T, 8scb:T, 6sgc:T2, 6swa:R, 5t2c:N, 6t59:T3, 7tm3:T, 7toq:AL21, 7tor:AL21, 7tut:T, 7ucj:T, 7uck:T, 4ug0:LT, 4ujc:BT, 4ujd:AT, 4uje:CT, 4v5z:Bq, 4v6x:CT, 6w6l:U, 6xa1:LT, 7xnx:LT, 7xny:LT, 8xsx:LT, 8xsy:LT, 8xsz:LT, 6y0g:LT, 8y0w:LT, 8y0x:LT, 6y2l:LT, 6y57:LT, 6y6x:LT, 8yoo:LT, 8yop:LT, 6z6l:LT, 6z6m:LT, 6z6n:LT, 7zjw:LW, 7zjx:LW, 6zm7:LT, 6zme:LT, 6zmi:LT, 6zmo:LT, 6zvk:72
7 9bh5:CT 160 125 0.5873 0.4625 0.5920 2.75e-48 9cai:CT
8 4v6w:CT 158 126 0.5952 0.4747 0.5952 1.64e-47 6xu6:CT, 6xu7:CT, 6xu8:CT
9 7oya:T1 157 126 0.6349 0.5096 0.6349 4.72e-46 7oyb:T1
10 7oyc:T1 157 126 0.5952 0.4777 0.5952 5.30e-43
11 4v3p:LU 164 126 0.5556 0.4268 0.5556 2.85e-41 8ip8:BA, 8ipa:BA, 8ipb:BA, 8jiv:CT, 4v7e:CT
12 8azw:J 163 126 0.5317 0.4110 0.5317 8.57e-39 8b2l:J3, 7qiw:V, 7qiz:V
13 8br8:LU 157 127 0.5000 0.4013 0.4961 4.02e-37 8brm:LU, 8bsi:LU, 8bsj:LU, 8btd:LU, 8btr:LU, 8fru:T, 7pwg:T, 7pwo:T2
14 5xy3:T 158 123 0.4841 0.3861 0.4959 5.85e-36
15 6zu5:LT0 160 121 0.4127 0.3250 0.4298 1.08e-33
16 3j79:V 155 120 0.4444 0.3613 0.4667 6.44e-33 3jbn:AV, 3jbo:AV, 3jbp:AV, 8tpu:AV, 5umd:V
17 7qep:N1 159 125 0.4603 0.3648 0.4640 2.78e-30
18 5xxb:S 154 106 0.4444 0.3636 0.5283 7.20e-30
19 6rm3:LT0 159 126 0.4365 0.3459 0.4365 8.89e-30
20 4v8p:BP 156 114 0.4286 0.3462 0.4737 1.52e-29 4v8p:CP, 4v8p:EP, 4v8p:GP
21 6zj3:Lh 158 119 0.4286 0.3418 0.4538 4.22e-29
22 4v8m:BU 158 97 0.3730 0.2975 0.4845 7.18e-26 8ova:BU, 8ove:BU
23 8p5d:LT0 156 120 0.3730 0.3013 0.3917 2.64e-25 8p60:LT0, 8p60:KT0, 7qca:LT0
24 5t5h:U 126 79 0.3333 0.3333 0.5316 8.53e-24
25 8rxh:LS 158 94 0.3651 0.2911 0.4894 1.12e-22 8a3w:S, 8a98:S, 6az3:S, 3jcs:S, 8ovj:S, 8rxx:LS, 5t2a:S
26 8hku:L21E 97 31 0.1270 0.1649 0.5161 4.07e-05 8hkv:L21E, 8hky:L21E, 8hkz:L21E, 8hl1:L21E, 8hl2:L21E, 8hl3:L21E, 8hl4:L21E, 8hl5:L21E
27 7u0h:T 57 59 0.1825 0.4035 0.3898 6.08e-05
28 8esq:T 34 55 0.1667 0.6176 0.3818 0.015
29 6skf:BU 96 31 0.1032 0.1354 0.4194 0.37 6skg:BU, 6th6:BU, 4v4n:AR, 4v6u:BR
30 6tmh:A 512 31 0.0873 0.0215 0.3548 2.1 6tmh:E, 6tmh:C, 6tmk:A2, 6tmk:E2, 6tmk:C2, 6tmk:A1, 6tmk:E1, 6tmk:C1
31 3mm5:A 417 26 0.0873 0.0264 0.4231 2.2 3mm5:D, 3mm6:A, 3mm6:D, 3mm7:A, 3mm7:D, 3mm8:A, 3mm8:D, 3mm9:A, 3mm9:D, 3mma:A, 3mma:D, 3mmb:A, 3mmb:D, 3mmc:A, 3mmc:D
32 4wzo:71 93 69 0.1587 0.2151 0.2899 3.5
33 1h65:A 257 30 0.1032 0.0506 0.4333 3.9 3bb1:A, 3bb1:B, 3bb1:C, 3bb1:D, 3bb1:E, 3bb1:F, 3bb1:G, 3bb1:H, 1h65:B, 1h65:C
34 4izc:B 266 34 0.0952 0.0451 0.3529 6.3 4izc:A, 4izd:A, 4izd:B
35 8wm4:A 1331 62 0.1429 0.0135 0.2903 6.7
36 2hcs:A 487 51 0.1429 0.0370 0.3529 9.8 2hcn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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