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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RTRPRVGHIQFLNCLPLYWGLARTGTLLDFELTKDTPEKLSEQLVRGDLDIGPVTLVEFLKNADDLVAFPDIAVGCDGPV
MSCVIVSQVPLDRLDGARVALGSTSRTSVRLAQLLLSERFGVQPDYYTCPPDLSLMMQEADAAVLIGDAALRANMIDGPR
YGLDVHDLGALWKEWTGLPFVFAVWAARRDYAEREPVITRKVHEAFLASRNLSLEEVEKVAEQAARWEAFDEDTLAKFFT
TLDFRFGAPQLEAVTEFARRVGPTTGFPADVKVELLKPLE

The query sequence (length=280) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ahr:B 287 280 0.9964 0.9721 0.9964 0.0 7ahr:A, 7an5:A, 7an5:B, 7an6:A, 7an6:B, 7an7:A, 7an7:B, 7an8:A, 7an8:B, 7an9:A, 7an9:B, 7ywc:A, 7ywc:B
2 6o9a:A 271 269 0.2857 0.2952 0.2974 1.49e-22 6o9a:B
3 3a3u:A 270 209 0.2107 0.2185 0.2823 1.79e-07 2czl:A
4 6g4d:B 453 130 0.1286 0.0795 0.2769 2.1 7b4i:AAA, 7b4i:BBB, 7b4j:A, 7b4j:B, 6g4d:A, 6g4e:A, 6g4e:B, 6g4f:A, 6g4f:B, 6tb0:A, 6tb0:B, 6tb1:A, 6tb1:B
5 7w6u:A 597 43 0.0643 0.0302 0.4186 3.1 7w6r:A, 7xby:A
6 3oi8:A 156 34 0.0536 0.0962 0.4412 3.2 3oi8:B
7 5kr3:A 458 113 0.1000 0.0611 0.2478 4.2 5kr3:B, 5kr4:A, 5kr4:B, 5kr5:A, 5kr5:B
8 8the:A 712 73 0.0750 0.0295 0.2877 4.2
9 6ssy:A 298 143 0.1214 0.1141 0.2378 4.5 6ssy:B, 6st0:A, 6st0:B
10 4xqk:A 1517 92 0.0821 0.0152 0.2500 6.2 4xqk:B
11 8umv:D 329 46 0.0607 0.0517 0.3696 7.2 8ui7:D, 8ui8:D, 8ui9:D, 8uii:D, 8umt:D, 8umw:D, 8umy:D, 8un0:D, 8unj:D, 6vvo:D, 7z6h:D
12 1jlk:A 141 51 0.0679 0.1348 0.3725 7.8
13 1obf:O 335 39 0.0500 0.0418 0.3590 7.9 1obf:P
14 4fln:B 464 23 0.0393 0.0237 0.4783 9.0 4fln:A, 4fln:C
15 3lez:A 260 50 0.0571 0.0615 0.3200 9.1
16 1g4u:S 360 47 0.0607 0.0472 0.3617 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218