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BioLiP
>protein
RTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDIRLLTPVEGVEHEDNLIVRAARLLMKTAADS
GRLPTGSGANISIDKRLPVGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGHAAFAEGVGEILT
PVDPPEKWYLVAHPGVSIPTPVIFKDPELPRNTPKRSIETLLKCEFSNDCEVIARKRFREVDAVLSWLLEYAPSRLTGTG
ACVFAEFDTESEARQVLEQAPEWLNGFVAKGVNLSPLHRA

The query sequence (length=280) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1oj4:A 283 280 0.9964 0.9859 0.9964 0.0 1oj4:B, 8qc7:A, 8qc7:B, 8qcc:A, 8qcc:B, 8qcn:A, 8qcn:B, 8qco:A, 8qco:B, 2ww4:A, 2ww4:B
2 8ckh:A 281 278 0.8464 0.8434 0.8525 5.12e-171 8ckh:B
3 2v2q:B 270 253 0.3107 0.3222 0.3439 1.40e-26 2v2q:A, 2v2v:A, 2v2v:B, 2v2z:A, 2v2z:B, 2v34:A, 2v34:B, 2v8p:A, 2v8p:B, 2vf3:A, 2vf3:B
4 4dxl:A 304 184 0.2429 0.2237 0.3696 3.01e-24 4ed4:A, 4emd:A
5 3pye:A 301 160 0.2179 0.2027 0.3812 2.64e-22 3pyf:A, 3pyg:A
6 4hac:A 312 64 0.0786 0.0705 0.3438 0.001 4hac:B, 6mde:A, 6mdf:A, 6mdf:B
7 1clv:A 471 119 0.1179 0.0701 0.2773 0.23 1jae:A, 1tmq:A, 1viw:A
8 8eeg:B 440 52 0.0679 0.0432 0.3654 0.53 8eef:A, 8eef:B, 8eeg:A, 8eeh:A, 8eeh:B, 8eei:A, 8eei:B, 8eej:B, 8eej:A, 8eek:A, 8eek:B, 8eel:A, 8eel:B, 8eem:A, 8eem:B, 8een:B, 8een:A, 8eeo:A, 8eeo:B
9 7nyw:B 858 41 0.0607 0.0198 0.4146 1.2
10 5mqf:L 336 124 0.0964 0.0804 0.2177 1.4
11 7nyx:A 1467 43 0.0643 0.0123 0.4186 1.7 7nyx:B, 7nyz:A, 7nyz:B, 7nz0:B, 7nz0:A, 7nz2:A3, 7nz2:B3, 7nz2:A4, 7nz2:B4, 7nz2:A1, 7nz2:B1, 7nz2:A2, 7nz2:B2, 7nz3:A1, 7nz3:B1, 7nz3:A2, 7nz3:B2
12 3ahy:B 466 60 0.0714 0.0429 0.3333 2.9 3ahy:A, 3ahy:C, 3ahy:D
13 4wyw:A 479 92 0.0643 0.0376 0.1957 3.4 8c1n:A, 8c1n:B, 8c2p:A, 2d7s:A, 2e9r:X, 2e9t:A, 2e9t:D, 2e9z:A, 2ec0:A, 2ec0:D, 2f8e:X, 6gvy:A, 4iqx:A, 5jxs:A, 3klv:A, 3kmq:A, 3kms:A, 3kna:A, 3koa:A, 5n95:A, 3nl0:A, 3nma:A, 1wne:A, 4wyl:A, 4wzm:A, 4wzq:A, 4x2b:A
14 8dzv:A 235 29 0.0429 0.0511 0.4138 4.0
15 7nsh:BC 700 70 0.0714 0.0286 0.2857 7.2 7l20:w
16 3pty:A 284 55 0.0643 0.0634 0.3273 7.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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