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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RTLVLYDQSTEPLEEYSVYLKDLEQRNYKLEYLDINSTSTTVDLYDKEQRLFDNIIVFPTKGGKNLARQIPVKQLIKFFE
NEGNILCMSSPGAVPNTIRLFLNELGIYPSPKGHVIRDYFSPSSEELVVSSNHLLNKYVYNARKSEDFVFGESSAALLEN
REQIVPILNAPRTSFTESKGKCNSWTSGSQGFLVVGFQNLNNARLVWIGSSDFLKNKNQDSNQEFAKELLKWTFNEKSVI
KSVHAVHSHADGTSYDEEPYKIKDKVIYSVGFSEWNGEEWLPHIADDIQFELRQVDPYYRLTLSPSGNDSETQYYTTGEF
ILPDRHGVFTFLTDYRKIGLSFTTDKDVKAIRHLANDEYPRSWEISNSWVYISAICGVIVAWIFFVVSFVTTSS

The query sequence (length=394) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6c26:B 397 394 1.0000 0.9924 1.0000 0.0 8age:G, 6ezn:G, 7oci:G
2 8pn9:G 411 416 0.2563 0.2457 0.2428 5.74e-29 6s7o:G, 6s7t:G
3 3djj:A 462 29 0.0431 0.0368 0.5862 0.071 2aaq:A, 1bwc:A, 3djg:X, 3dk4:A, 3dk8:A, 3dk9:A, 1dnc:A, 2gh5:A, 2gh5:B, 1gra:A, 1grb:A, 1gre:A, 1grf:A, 1grg:A, 1grh:A, 1grt:A, 2grt:A, 3grs:A, 3grt:A, 4gr1:A, 4grt:A, 5grt:A, 1gsn:A, 1k4q:A, 3sqp:A, 3sqp:B, 1xan:A
4 7vno:A 452 55 0.0482 0.0420 0.3455 2.9 7vno:B, 7vnt:A, 7vnt:B, 7vo1:A, 7vo1:B
5 2vf7:B 813 88 0.0609 0.0295 0.2727 3.0 2vf8:A
6 2vf8:B 835 88 0.0609 0.0287 0.2727 3.5 2vf7:A, 2vf7:C
7 6crm:A 512 20 0.0279 0.0215 0.5500 5.1 4tmu:A
8 7a8r:A 531 107 0.0736 0.0546 0.2710 5.2 7a8r:B, 6jtz:A, 6jtz:B, 4u7d:A, 4u7d:B, 4u7d:D, 4u7d:C, 2v1x:A, 2v1x:B, 2wwy:B, 2wwy:A, 8yrs:B, 8yrs:A
9 1oyw:A 516 20 0.0279 0.0213 0.5500 5.4 1oyy:A
10 8vdk:A 432 61 0.0355 0.0324 0.2295 5.4
11 5mac:A 473 20 0.0228 0.0190 0.4500 8.4 5mac:B, 5mac:D, 5mac:C, 5mac:E
12 8oo6:A 604 43 0.0431 0.0281 0.3953 8.4 1d8y:A, 1d9d:A, 1d9f:A, 1kfs:A, 2kfn:A, 2kfz:A, 1kln:A, 1krp:A, 1ksp:A, 2kzm:A, 2kzz:A, 8ooy:A, 1qsl:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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