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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RTKRWEGGYERTWEILKEVRLGMMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRA
EKLTELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAAKI
RVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMA
EPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
AVCQNVFCVDCDVFVHDSLHCCPGCIH

The query sequence (length=347) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ena:2 385 378 0.9914 0.8935 0.9101 0.0 8bvw:4, 8byq:4, 8ebs:E, 8ebt:E, 8ebu:E, 8ebv:E, 8ebw:E, 8ebx:E, 8eby:E, 7egb:2, 7egc:2, 7enc:2, 8gxq:HG, 8gxs:HG, 7lbm:a, 7nvr:6, 7nvw:6, 7nvx:6, 7nvy:6, 7nvz:6, 7nw0:6, 6o9l:6, 6o9m:6, 8wak:2, 8wal:2, 8wan:2, 8wao:2, 8wap:2, 8waq:2, 8war:2, 8was:2, 1z60:A
2 6nmi:E 366 330 0.8963 0.8497 0.9424 0.0
3 7ad8:D 280 327 0.7983 0.9893 0.8471 0.0 6ro4:D
4 8cen:6 383 380 0.4323 0.3916 0.3947 2.22e-91 8ceo:6, 7k01:6, 7k04:6, 7m2u:6, 7ml0:6, 7ml1:6, 7ml2:6, 7ml3:6, 7ml4:6, 7o4i:6, 7o4j:6, 7o4k:6, 7o4l:6, 7o72:6, 7o73:6, 7o75:6, 7zs9:6, 7zsa:6, 7zsb:6
5 6gym:6 335 337 0.3660 0.3791 0.3769 8.52e-70 5oqj:6, 5oqm:6
6 5o85:D 53 62 0.1499 0.9811 0.8387 4.79e-27 5o85:B
7 5nus:B 74 68 0.0692 0.3243 0.3529 6.86e-08 5obz:B
8 5d4y:A 314 103 0.0749 0.0828 0.2524 0.33 5d4y:B
9 6n8m:Y 128 100 0.0807 0.2188 0.2800 0.53 6n8n:Y, 6n8o:Y, 6rzz:s, 6s05:s
10 1uqw:A 487 64 0.0576 0.0411 0.3125 1.3 1uqw:B
11 6r4n:C 147 55 0.0576 0.1361 0.3636 2.7 6r4n:A, 6r4n:E
12 4uir:A 641 81 0.0634 0.0343 0.2716 5.4
13 6zot:B 180 41 0.0346 0.0667 0.2927 8.8 6zot:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218