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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RTKLILEARINEYMPRRGNPHVPWTPKEIGEAAAQAREAGASIVHFHARQADGSPSHDYETYAESIREIRARSDVLVHPT
LAHIERLCLDPALKPDFAPVALGSTNIDRYDDVEKRYETGDRVYLNNIDTLQHFSKRLRELGVKPAFIAWTVPFTRTLDA
FMDMGLVDDPAYLLFELTDCGIRGGHPGTIRGLRAHTDFLPPGRQIQWTVCNKIGNLFGPAAAAIEEGGHVAIGLGDYLY
PELGTPTNGEVVQTVANMARAMGREIATPAETKEILGI

The query sequence (length=278) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5zmu:D 287 287 0.9964 0.9652 0.9652 0.0 5zmu:A, 5zmu:B, 5zmu:C, 5zmy:A, 5zmy:B, 5zmy:C, 5zmy:D, 5zmy:E, 5zmy:F, 5zmy:G, 5zmy:H
2 3lot:D 313 284 0.3058 0.2716 0.2993 4.62e-27 3lot:A, 3lot:B, 3lot:C
3 3e49:A 307 281 0.2626 0.2378 0.2598 1.74e-21 3e49:B, 3e49:C, 3e49:D
4 2y7d:D 278 286 0.2626 0.2626 0.2552 1.28e-19 2y7d:A, 2y7d:B, 2y7d:C, 2y7e:A, 2y7e:B, 2y7f:A, 2y7f:B, 2y7f:C, 2y7f:D, 2y7g:A, 2y7g:B
5 3no5:E 275 284 0.2734 0.2764 0.2676 1.55e-16 3no5:A, 3no5:B, 3no5:C, 3no5:D, 3no5:F
6 3e02:A 310 280 0.2734 0.2452 0.2714 8.33e-16
7 3chv:A 279 276 0.2626 0.2616 0.2645 4.12e-14
8 3fa5:A 276 279 0.2590 0.2609 0.2581 1.26e-09 3fa5:B
9 4nna:A 498 31 0.0468 0.0261 0.4194 0.19 4nnb:A, 4nnc:A
10 8xx9:A 620 104 0.0935 0.0419 0.2500 1.1 8xxa:A
11 5iky:A 1048 34 0.0468 0.0124 0.3824 1.2 5ikz:A
12 7e0d:A 604 57 0.0827 0.0381 0.4035 4.7 7e0c:A, 2e1m:A, 2e1m:B, 2e1m:C, 8jpw:A
13 3ku4:B 293 112 0.0935 0.0887 0.2321 5.0 3ku4:A, 3ku4:C, 3ku4:D, 3kuk:A, 3kuk:B, 3kvr:A, 3kvr:B, 3kvy:A, 3kvy:B
14 7uoi:A 383 74 0.0791 0.0574 0.2973 8.5 8vkt:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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