Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQVKGWFKNMRAKIKKST

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6m3d:C 108 55 0.9107 0.4722 0.9273 2.07e-29 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
2 6m3d:C 108 51 0.8214 0.4259 0.9020 2.56e-26 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
3 4qtr:C 57 56 0.6250 0.6140 0.6250 4.46e-16 4qtr:A, 4qtr:B, 4qtr:D
4 8eml:A 58 54 0.5179 0.5000 0.5370 3.72e-13 8eml:B
5 4rdu:D 62 54 0.5000 0.4516 0.5185 4.09e-13 4rdu:A, 4xrs:I, 4xrs:G
6 2me6:A 71 54 0.5000 0.3944 0.5185 1.60e-12
7 1b72:A 68 54 0.4821 0.3971 0.5000 5.49e-12
8 1zq3:P 68 49 0.4643 0.3824 0.5306 1.61e-11
9 6es3:K 72 54 0.4464 0.3472 0.4630 1.99e-11 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
10 2r5z:A 75 54 0.4643 0.3467 0.4815 2.07e-11 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
11 8pna:A 67 56 0.4464 0.3731 0.4464 3.38e-11 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
12 1ig7:A 58 54 0.4643 0.4483 0.4815 3.69e-11
13 1jgg:A 57 54 0.4286 0.4211 0.4444 4.07e-11 1jgg:B
14 4cyc:A 66 54 0.4286 0.3636 0.4444 1.18e-10 1b8i:A
15 4uus:A 67 54 0.4286 0.3582 0.4444 1.69e-10 4uus:E
16 1ahd:P 68 54 0.4464 0.3676 0.4630 7.01e-10
17 2h1k:B 60 54 0.4286 0.4000 0.4444 3.16e-09 2h1k:A
18 3rkq:A 58 53 0.4464 0.4310 0.4717 3.56e-09 3rkq:B
19 4rbo:A 55 53 0.4286 0.4364 0.4528 9.54e-09 4rbo:D
20 2lkx:A 68 54 0.4286 0.3529 0.4444 9.89e-09
21 3a01:F 61 54 0.3929 0.3607 0.4074 1.40e-08 3a01:B, 3lnq:A
22 1puf:A 77 54 0.4286 0.3117 0.4444 1.79e-08 2lp0:A
23 3a01:A 78 56 0.3929 0.2821 0.3929 1.81e-08 3a01:E
24 2ld5:A 67 54 0.3750 0.3134 0.3889 3.40e-08
25 5eea:G 63 54 0.3750 0.3333 0.3889 4.47e-08 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
26 5flv:M 229 51 0.4286 0.1048 0.4706 6.09e-08 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
27 1fjl:A 65 54 0.3750 0.3231 0.3889 7.23e-08 1fjl:B, 1fjl:C
28 1nk2:P 77 55 0.3929 0.2857 0.4000 8.32e-08 1nk3:P
29 8osb:E 62 54 0.4107 0.3710 0.4259 1.05e-07
30 3cmy:A 60 54 0.3929 0.3667 0.4074 2.75e-07
31 5zjr:A 64 56 0.4107 0.3594 0.4107 1.53e-06 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
32 5hod:A 61 54 0.3929 0.3607 0.4074 3.43e-06 5hod:D
33 6e8c:A 135 51 0.3571 0.1481 0.3922 4.66e-06 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
34 6e8c:A 135 49 0.2500 0.1037 0.2857 0.052 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
35 8ejo:A 56 51 0.3214 0.3214 0.3529 9.96e-06 8ejo:B, 8ejp:A, 8ejp:B
36 8ik5:C 67 54 0.3393 0.2836 0.3519 2.61e-04 8ike:C, 8ilw:C
37 9b8u:B 66 47 0.2857 0.2424 0.3404 0.001 9b8u:A, 9b8u:C, 9b8u:D
38 4egc:A 539 40 0.2500 0.0260 0.3500 0.002
39 1lfu:P 82 37 0.2321 0.1585 0.3514 0.010 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
40 1le8:A 53 53 0.2321 0.2453 0.2453 0.11 1akh:A, 1yrn:A
41 4j19:A 77 69 0.3214 0.2338 0.2609 0.13 4j19:B
42 1mwq:A 100 54 0.3393 0.1900 0.3519 0.29
43 6fqp:A 67 38 0.2321 0.1940 0.3421 1.4 6fqp:B, 6fqq:A, 6fqq:B, 6fqq:D, 6fqq:E
44 8ui7:A 643 39 0.2500 0.0218 0.3590 1.7 8ui8:A, 8ui9:A, 8uii:A
45 1akh:B 78 39 0.2500 0.1795 0.3590 2.4 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
46 1gt0:C 137 54 0.2500 0.1022 0.2593 3.5 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
47 5wc9:A 136 54 0.2857 0.1176 0.2963 3.7 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
48 1mnm:C 77 34 0.2143 0.1558 0.3529 4.1 1mnm:D
49 4g0k:A 327 38 0.2321 0.0398 0.3421 4.4 4g0k:B, 4g0l:A, 4g0l:B, 3r3e:A, 3r3e:B
50 8fip:A 338 23 0.1786 0.0296 0.4348 4.5 8fio:A, 8fio:B, 8fip:B
51 8g8e:X 140 27 0.1964 0.0786 0.4074 5.4 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
52 2d5v:A 135 49 0.2679 0.1111 0.3061 6.2 2d5v:B, 8t0f:A, 8t11:A
53 5htv:A 424 17 0.1786 0.0236 0.5882 8.7 5htx:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218