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BioLiP
>protein
RSVYFCGSIRGGREDQALYARIVSRLRRYGKVLTGDQFIHEQNLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILC
LFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEAYL

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4fyh:A 127 126 0.9920 0.9764 0.9841 7.09e-87 4fyh:B, 4fyh:C, 4fyi:A, 4fyi:C, 4fyk:B, 4fyk:D, 4kxl:B, 4kxn:B, 4kxn:C
2 2klh:A 152 142 0.9920 0.8158 0.8732 1.47e-84 4fyh:D, 4fyi:B, 4fyi:D, 4fyk:A, 4fyk:C, 2klh:B, 4kxl:A, 4kxl:C, 4kxl:D, 4kxm:A, 4kxm:B, 4kxm:C, 4kxm:D, 4kxn:A, 4kxn:D, 4p5d:C, 4p5d:A
3 8osc:B 126 122 0.8320 0.8254 0.8525 6.61e-72 8osc:A
4 8qhq:A 143 137 0.8320 0.7273 0.7591 9.58e-70 4p5e:A, 4p5e:B, 8qhq:B, 8qhq:C, 8qhq:D, 8qhq:E, 8qhq:F, 8qhr:A, 8qhr:B
5 2f17:A 255 62 0.1520 0.0745 0.3065 0.60 2f17:B, 1ig3:A, 1ig3:B
6 8x1a:B 319 46 0.1440 0.0564 0.3913 0.65
7 3s4y:A 224 51 0.1280 0.0714 0.3137 0.72 3s4y:B
8 8v4a:A 466 38 0.1040 0.0279 0.3421 0.92 9bnj:A, 9bnj:B, 9bnj:C, 9bnj:D, 8v2k:A, 8v2k:B, 8v2k:C, 8v2k:D, 8v4a:B, 8v4a:C, 8v4a:D, 8v6p:A, 8v6p:B, 8v6p:C, 8v6p:D, 8v9p:A, 8v9p:B, 8v9p:C, 8v9p:D, 5w19:A, 5w19:B, 5w19:C, 5w19:D
9 1f8y:A 156 64 0.1360 0.1090 0.2656 1.3 1f8y:B
10 6ryd:A 69 43 0.1120 0.2029 0.3256 2.1 6ryd:B, 6ryd:E, 6ryd:F, 6ryi:A, 6ryi:B, 6ryi:C, 6ryi:D, 6ryi:E, 6ryl:A, 6ryl:B, 6ryl:C, 6ryl:D, 6ryl:E
11 8rh3:A 156 47 0.1520 0.1218 0.4043 2.8 8pqp:A, 8pqq:A, 8pqq:C, 8pqq:B, 8pqq:D, 8pqr:B, 8pqr:D, 8pqr:A, 8pqr:C, 8qc0:A, 8qc0:B, 8qc0:C, 8qc0:D, 8rh3:B, 8rh3:C, 8rh3:D
12 5elx:A 391 36 0.0800 0.0256 0.2778 6.0 3peu:A, 3pev:A, 3pew:A, 3pey:A, 3rrm:A, 3rrn:A
13 6sl1:A 2652 66 0.1760 0.0083 0.3333 8.6 6sky:A, 6sky:B
14 6skz:A 2638 66 0.1760 0.0083 0.3333 8.7 6sl0:A, 6sl0:B
15 3a9g:A 338 41 0.1120 0.0414 0.3415 10.0 3a9h:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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