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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RSVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHAGGDQFIHEQNLNWLQQADVVVAEVTQPSLGVGYELGRAVALGK
PILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFE

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4fyh:A 127 126 0.9841 0.9764 0.9841 7.90e-87 4fyh:B, 4fyh:C, 4fyi:A, 4fyi:C, 4fyk:B, 4fyk:D, 4kxl:B, 4kxn:B, 4kxn:C
2 2klh:A 152 139 0.9921 0.8224 0.8993 6.24e-86 4fyh:D, 4fyi:B, 4fyi:D, 4fyk:A, 4fyk:C, 2klh:B, 4kxl:A, 4kxl:C, 4kxl:D, 4kxm:A, 4kxm:B, 4kxm:C, 4kxm:D, 4kxn:A, 4kxn:D, 4p5d:C, 4p5d:A
3 8qhq:A 143 136 0.8413 0.7413 0.7794 1.76e-72 4p5e:A, 4p5e:B, 8qhq:B, 8qhq:C, 8qhq:D, 8qhq:E, 8qhq:F, 8qhr:A, 8qhr:B
4 8osc:B 126 125 0.8333 0.8333 0.8400 2.38e-72 8osc:A
5 2f17:A 255 62 0.1508 0.0745 0.3065 0.51 2f17:B, 1ig3:A, 1ig3:B
6 3s4y:A 224 51 0.1270 0.0714 0.3137 0.78 3s4y:B
7 1f8y:A 156 64 0.1349 0.1090 0.2656 1.3 1f8y:B
8 8rh3:A 156 102 0.2460 0.1987 0.3039 2.3 8pqp:A, 8pqq:A, 8pqq:C, 8pqq:B, 8pqq:D, 8pqr:B, 8pqr:D, 8pqr:A, 8pqr:C, 8qc0:A, 8qc0:B, 8qc0:C, 8qc0:D, 8rh3:B, 8rh3:C, 8rh3:D
9 8v4a:A 466 37 0.0952 0.0258 0.3243 3.4 9bnj:A, 9bnj:B, 9bnj:C, 9bnj:D, 8v2k:A, 8v2k:B, 8v2k:C, 8v2k:D, 8v4a:B, 8v4a:C, 8v4a:D, 8v6p:A, 8v6p:B, 8v6p:C, 8v6p:D, 8v9p:A, 8v9p:B, 8v9p:C, 8v9p:D, 5w19:A, 5w19:B, 5w19:C, 5w19:D
10 7l5s:A 771 26 0.0952 0.0156 0.4615 9.9 7l5i:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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