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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RSRKLILFIVFLALLLDNMLLTVVVPIIPSYLYSIKHEDKDLLNENVQVGLLFASKATVQLITNPFIGLLTNRIGYPIPI
FAGFCIMFVSTIMFAFSSSYAFLLIARSLQGIGSSCSSVAGMGMLASVYTDAEEAGNVMGIALGGLAMGVLVGPPFGSVL
YEFVGKTAPFLVLAALVLLDGAIQLFVLQPSRVQPESQKGTPLTTLLKDPYILIAAGSICFANMGIAMLEPALPIWMMET
MCSRKWQLGVAFLPASISYLIGTNIFGILAHKMGRWLCALLGMIIVGVSILCIPFAKNIYGLIAPNFGVGFAIGMVDSSM
MPIMGYLVDLRHVSVYGSVYAIADVAFCMGYAIGPSAGGAIAKAIGFPWLMTIIGIIDILFAPLCFFLRSPP

The query sequence (length=392) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8wvg:A 394 392 0.9694 0.9645 0.9694 0.0 8jsw:A, 8jsx:A, 8jt5:A, 8jt9:A, 8jta:A, 8jtb:A, 8jtc:A, 8t69:A, 8t6a:A, 8t6b:A, 8thr:A, 8wlk:A, 8wll:A, 8wlm:A, 8wre:A, 8xo9:A, 8xoa:A
2 8tgi:A 385 391 0.7321 0.7455 0.7340 0.0 8tgg:A, 8tgg:B, 8tgh:A, 8tgh:B, 8tgi:B, 8tgj:B, 8tgk:A, 8tgk:B, 8tgl:B, 8tgm:A, 8tgm:B, 8tgn:A, 8tgn:B
3 8zmr:A 384 376 0.3954 0.4036 0.4122 5.90e-96
4 8ttg:A 374 173 0.1224 0.1283 0.2775 2.28e-09 8tte:A
5 8ufd:A 475 87 0.0638 0.0526 0.2874 0.072 8ufd:B
6 7aaq:A 487 94 0.0561 0.0452 0.2340 0.20 7aar:A, 6h7d:A
7 6vbg:B 397 74 0.0536 0.0529 0.2838 0.22 6c9w:A, 4oaa:A, 4oaa:B, 6vbg:A, 2y5y:A, 2y5y:B, 4zyr:A, 4zyr:B
8 6vbg:B 397 85 0.0689 0.0680 0.3176 1.7 6c9w:A, 4oaa:A, 4oaa:B, 6vbg:A, 2y5y:A, 2y5y:B, 4zyr:A, 4zyr:B
9 8jtz:A 530 87 0.0587 0.0434 0.2644 0.24 8jtt:A
10 8sc2:A 453 87 0.0587 0.0508 0.2644 0.26 8jtv:A, 8ju0:A, 8sc3:A, 8sc6:A
11 8u3g:A 427 230 0.1352 0.1241 0.2304 0.27 8u3h:A
12 3n3a:C 131 98 0.0689 0.2061 0.2755 0.30 3n39:C, 3n39:D, 3n3a:D, 3n3b:C, 3n3b:D
13 8et9:A 517 58 0.0383 0.0290 0.2586 1.2
14 8et9:A 517 75 0.0510 0.0387 0.2667 3.7
15 8et7:A 532 87 0.0587 0.0432 0.2644 1.2 8et8:A
16 9iuk:A 1335 103 0.0740 0.0217 0.2816 1.5 9iul:A, 9ium:A
17 6ex6:A 634 53 0.0408 0.0252 0.3019 5.0 6ex6:B
18 7nvo:D 247 79 0.0434 0.0688 0.2152 7.0 7nvo:d
19 8bvt:A 508 39 0.0357 0.0276 0.3590 9.8 8bvs:A, 8bw7:A, 8sdz:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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