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BioLiP
>protein
RSNAEIVCEAIKTIGIGATAAQLTRQLNMEKKEINRVLYSLAKKGKVYSSDDIPPRWFMTT

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7c0i:B 67 61 0.9836 0.8955 0.9836 1.09e-38 7c0i:A, 7c0i:C
2 3f21:A 67 43 0.3934 0.3582 0.5581 1.27e-09 2acj:B, 2acj:C, 2acj:D, 3f21:B, 3f21:C, 3f22:A, 3f22:B, 3f22:C, 3f23:A, 3f23:B, 3f23:C, 2gxb:A, 2gxb:B, 3irq:B, 3irq:A, 3irq:D, 3irq:C, 3irr:C, 3irr:D, 3irr:A, 3irr:B, 1qbj:A, 1qbj:B, 1qbj:C, 5zu1:C, 5zu1:A, 5zu1:B, 5zuo:B, 5zuo:C, 5zuo:D, 5zup:B, 5zup:C, 5zup:D
3 2acj:A 53 39 0.3770 0.4340 0.5897 1.86e-09 5zuo:A, 5zup:A
4 5zu1:D 47 32 0.3279 0.4255 0.6250 9.14e-08
5 1sfu:A 70 41 0.2787 0.2429 0.4146 1.08e-04 1sfu:B
6 4kmf:A 62 40 0.1967 0.1935 0.3000 1.12e-04
7 4lb5:B 63 53 0.2623 0.2540 0.3019 0.003 4lb5:A, 4lb6:B
8 7c0j:B 62 60 0.3443 0.3387 0.3500 0.004 7c0j:A
9 4wcg:B 61 43 0.2131 0.2131 0.3023 0.005 4wcg:A
10 3ei9:A 412 58 0.2951 0.0437 0.3103 0.77 3ei5:A, 3ei5:B, 3ei6:A, 3ei6:B, 3ei8:A, 3ei8:B, 3ei9:B, 3eia:A, 3eia:B, 3eib:A, 3eib:B, 2z1z:A, 2z1z:B, 2z20:A, 2z20:B
11 3tgn:B 146 34 0.1803 0.0753 0.3235 1.5 3tgn:A
12 7nh7:A 295 28 0.1803 0.0373 0.3929 1.6
13 8a8o:A 556 25 0.1967 0.0216 0.4800 1.8 8a8o:B
14 6pas:B 576 20 0.1475 0.0156 0.4500 3.7 6pat:B
15 6yxx:BF 346 48 0.2131 0.0376 0.2708 5.2 7aoi:BF, 6hiv:BF, 6hix:BF, 6yxy:BF

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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