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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RSKRALEKRAPKIVENPKTCLFLRGTTCSQITQDAMNDLYAMRQVHAKRFHKKNAIHPFEDATSLCFFSEKNDCSLMVFG
SSNKKRPHTLTFVRMFDYKVLDMLEFYLDPDTYRSISQFKTSKIPIGMRPMMVFAGTAFESPVPNAFTMAKSMLIDFFRG
EPSDKIDVEGLRFVVVVTADEPTSQKPILRLRVYGIRTKRSGTRLPRVEVEEHGPRMDFRLGRMREPDPAMLKEAMKKA

The query sequence (length=239) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8pv1:Cf 285 239 0.9916 0.8316 0.9916 3.66e-177 8i9r:Cy, 7ozs:C, 8pv2:Cf, 8pv3:Cf, 8pv4:Cf, 8pv5:Cf, 8pv7:Cf, 8pvk:Cf, 8pvl:Cf
2 7uoo:v 293 248 0.4770 0.3891 0.4597 8.83e-69 5a53:C, 7bt6:v, 7btb:v, 6ft6:v, 3jct:v, 6m62:v, 7oh3:v, 7ohq:v, 7oht:v, 7ug6:v, 7uqb:v, 7uqz:v, 7v08:v
3 8fl0:ND 270 236 0.4142 0.3667 0.4195 3.86e-57 8ir1:T, 8ir3:T
4 7rkf:A 350 53 0.0628 0.0429 0.2830 0.69
5 8iys:A 355 53 0.0586 0.0394 0.2642 3.5 3ah8:A, 2bcj:Q, 5do9:A, 5do9:C, 5do9:E, 4ekc:A, 4ekc:C, 4ekd:A, 4gnk:A, 4gnk:C, 8jpb:Q, 8jpc:Q, 8jpe:Q, 4qj3:A, 4qj4:A, 4qj5:A, 2rgn:A, 2rgn:D, 7sq2:A, 8uqn:A, 8uqo:A
6 6k61:A 742 27 0.0544 0.0175 0.4815 4.4 6jeo:aA, 6jeo:bA, 6jeo:cA, 6jeo:dA, 6k61:a, 6tcl:A1, 6tcl:A2, 6tcl:A, 6tcl:AA, 7y3f:A
7 7ne7:A 677 181 0.1548 0.0547 0.2044 4.8 7ne4:A, 7ne5:A, 7ob1:A, 7ywp:A
8 7er1:A 303 17 0.0418 0.0330 0.5882 7.9
9 7wuh:E 1044 79 0.0753 0.0172 0.2278 8.7 7wuh:A, 7xu3:B, 7xu3:A, 7xu3:C, 6zb5:A, 6zb5:C, 6zb5:B
10 8pjk:A 222 58 0.0711 0.0766 0.2931 9.8 7e2x:A, 7e2z:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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