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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RRYSVGYALAPKKQASFIQVSLVNLAKERGIDLIKIDTDKPLIDQGPFDCVLHKMDGDDWKRQLKEYGSEFPQALIIDSP
EAIERLHNRISMLQAVGEVEIDCENASFGIPKQTVIYDAKMVSAINLENEGLEFPVIAKPLVADGSAKSHKMLLVFNKDG
LRKLKPPIVLQEFVNHGAVIFKVYVVGDYVKCVKRKSLPDVKERLESYLPFSQVSNDDKYYKLMNLENAEYPPLSFLTNI
ARGLRRVTKLHLFNFDVIRDDRVGNRYLIIDINYFPGYAKMPNYERVLTDFFWDVLNQNDKS

The query sequence (length=302) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8oxe:A 302 302 1.0000 1.0000 1.0000 0.0
2 7tn8:A 281 297 0.5530 0.5943 0.5623 3.68e-117
3 2qb5:A 338 314 0.3179 0.2840 0.3057 7.76e-41 2q7d:A, 2q7d:B, 2qb5:B
4 7pup:A 479 182 0.1954 0.1232 0.3242 1.21e-19
5 1z2n:X 311 242 0.1954 0.1897 0.2438 9.10e-14 1z2o:X, 1z2p:X
6 7zn6:A 576 51 0.0695 0.0365 0.4118 2.2
7 6w2j:B 1364 70 0.0762 0.0169 0.3286 2.5
8 5v13:A 268 129 0.1126 0.1269 0.2636 2.8 5v13:B, 5v13:C
9 2d30:A 124 38 0.0397 0.0968 0.3158 3.4 2d30:B
10 2p88:A 369 104 0.0728 0.0596 0.2115 5.7 2p88:B, 2p88:C, 2p88:D, 2p88:E, 2p88:F, 2p88:G, 2p88:H, 2p8b:A, 2p8c:A
11 8fgw:B 1152 53 0.0464 0.0122 0.2642 7.8 8fh3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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