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BioLiP
>protein
RRYRPTNLEPGDAGIYHHEGHRIRLTKDGRCIITCKTVEVYADESMTVDTPRTTFTGDVEIQKGLGVKGKSQFDSNITAP
DAIINGKSTDKHIHRGDSGGTTGPMQLEH

The query sequence (length=109) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3vto:B 110 109 1.0000 0.9909 1.0000 2.58e-78 3vto:A, 3vto:C, 3vto:P, 3vto:Q, 3vto:R
2 3aqj:A 117 84 0.2844 0.2650 0.3690 4.05e-06 3aqj:B, 3aqj:C, 3aqj:P, 3aqj:Q, 3aqj:R, 3qr7:A, 3qr7:B
3 4ru3:A 205 36 0.1284 0.0683 0.3889 0.41
4 8f70:A 567 76 0.2018 0.0388 0.2895 2.8 8f5n:A, 6n0a:A, 6n0a:B
5 8f70:A 567 76 0.2018 0.0388 0.2895 2.8 8f5n:A, 6n0a:A, 6n0a:B
6 1o12:A 363 55 0.1560 0.0468 0.3091 5.5 1o12:B
7 5yeu:A 381 26 0.1009 0.0289 0.4231 6.4 5yeu:B
8 6t5e:A 439 44 0.1376 0.0342 0.3409 6.6
9 1rm6:A 761 28 0.0917 0.0131 0.3571 7.6 1rm6:D, 1sb3:A, 1sb3:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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