Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RRTDEYILVRQTGQDKFAGTTKCNLDHLPTKAEFNASCRLYRDGVGNYYPPPLAFERIDLPEQLAAQLLEPREQSKQCFQ
YKLEVWNRAHAEMGITGTDIFYQTDKNIKLDRNYKLRPEDRYIQTEKYGRREIQKRYEHQFQAGSLLPDILIKTPQNDIH
FSYRFAGDAYANKRFEEFERAIKTKYGSDTEIKLKSKSGIMHDSKYLESWERGSADIRFAEFAGENRAQFPAATVNMGRQ
PMTRDRHVSVDYLLQNLPNSPWTQALKEGKLWDRVQVLARDGNRYMSPSRLEYSDPEHFTQLMDQVGLPVSMGRQSHAFD
RQAAVIVADGPNLREVPDLSPEKLSQKDVLIADRNEKGQRTGTYTNVVEYERLMMKLPSDAAQLLA

The query sequence (length=386) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3btp:A 386 386 1.0000 1.0000 1.0000 0.0
2 4dwr:B 486 91 0.0725 0.0576 0.3077 0.45 8dc9:A, 8dc9:B, 8dca:A, 8dca:B, 8dcb:A, 8dcb:B, 8dcd:A, 8dcd:B, 8dcf:A, 8dcf:B, 8dcg:A, 8dcg:B, 4dwq:A, 4dwq:B, 4dwr:A, 4dwr:C, 4isj:A, 4isj:B, 4isz:A, 4isz:B, 4it0:A, 4it0:B, 7lfq:A, 1uc2:A, 1uc2:B
3 7yav:A 501 90 0.0492 0.0379 0.2111 1.0 7yav:B
4 4yhb:B 262 81 0.0570 0.0840 0.2716 1.1 4yhb:A
5 5xn9:A 138 64 0.0518 0.1449 0.3125 1.7 5xn9:B, 5xna:A, 5xna:B
6 2iij:A 156 74 0.0518 0.1282 0.2703 2.1 8bv1:A, 8bv1:B, 8bv1:E, 8bv1:F, 8bv1:D, 8bv1:C, 8cj1:B, 8cj1:C, 8cj1:D, 8cj1:E, 8cj1:G, 8cj2:A, 8cj2:B, 8cj2:C, 8cj2:D, 8cj3:A, 6f0f:A, 6f0g:A, 6f0g:B, 6f0h:A, 6f0h:C, 2i32:A, 2i32:B, 7lo0:A, 7lo0:B, 7lo0:C, 7lo0:D, 7lo0:E, 7lo0:F, 7lo0:G, 7lo0:H, 6zuf:A, 6zuf:B
7 8w53:B 479 28 0.0285 0.0230 0.3929 2.6 8w53:A
8 2row:A 84 22 0.0259 0.1190 0.4545 7.0
9 4nxv:C 337 74 0.0596 0.0682 0.3108 8.9 4nxu:A, 4nxu:B, 4nxu:C, 4nxu:D, 4nxv:A, 4nxv:B, 4nxv:D, 4nxw:A, 4nxx:A, 4oag:A, 4oag:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218