Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RRSVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADEAAGGDQFIHEQNLNWLQQADVVVAEVTQPSLGVGYELGR
AVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEAYLV

The query sequence (length=136) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2klh:A 152 144 0.9926 0.8882 0.9375 7.38e-94 4fyh:D, 4fyi:B, 4fyi:D, 4fyk:A, 4fyk:C, 2klh:B, 4kxl:A, 4kxl:C, 4kxl:D, 4kxm:A, 4kxm:B, 4kxm:C, 4kxm:D, 4kxn:A, 4kxn:D, 4p5d:C, 4p5d:A
2 4fyh:A 127 134 0.9338 1.0000 0.9478 2.73e-88 4fyh:B, 4fyh:C, 4fyi:A, 4fyi:C, 4fyk:B, 4fyk:D, 4kxl:B, 4kxn:B, 4kxn:C
3 8qhq:A 143 139 0.8088 0.7692 0.7914 1.11e-74 4p5e:A, 4p5e:B, 8qhq:B, 8qhq:C, 8qhq:D, 8qhq:E, 8qhq:F, 8qhr:A, 8qhr:B
4 8osc:B 126 132 0.7794 0.8413 0.8030 5.70e-72 8osc:A
5 2f17:A 255 62 0.1397 0.0745 0.3065 0.72 2f17:B, 1ig3:A, 1ig3:B
6 3s4y:A 224 51 0.1176 0.0714 0.3137 0.93 3s4y:B
7 8v4a:A 466 38 0.0956 0.0279 0.3421 1.3 9bnj:A, 9bnj:B, 9bnj:C, 9bnj:D, 8v2k:A, 8v2k:B, 8v2k:C, 8v2k:D, 8v4a:B, 8v4a:C, 8v4a:D, 8v6p:A, 8v6p:B, 8v6p:C, 8v6p:D, 8v9p:A, 8v9p:B, 8v9p:C, 8v9p:D, 5w19:A, 5w19:B, 5w19:C, 5w19:D
8 1f8y:A 156 64 0.1250 0.1090 0.2656 1.5 1f8y:B
9 8x1a:B 319 59 0.1471 0.0627 0.3390 3.8
10 8rh3:A 156 47 0.1397 0.1218 0.4043 3.8 8pqp:A, 8pqq:A, 8pqq:C, 8pqq:B, 8pqq:D, 8pqr:B, 8pqr:D, 8pqr:A, 8pqr:C, 8qc0:A, 8qc0:B, 8qc0:C, 8qc0:D, 8rh3:B, 8rh3:C, 8rh3:D
11 3mk0:A 481 59 0.1176 0.0333 0.2712 5.4 1ew2:A, 2glq:A, 3mk1:A, 3mk2:A, 1zeb:A, 1zed:A, 1zef:A
12 2oi6:B 452 67 0.1471 0.0442 0.2985 6.6 4aa7:A, 4aa7:B, 1fwy:A, 1fwy:B, 1hv9:A, 1hv9:B, 2oi5:A, 2oi5:B, 2oi6:A, 2oi7:A, 2oi7:B, 3twd:A, 3twd:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218