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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RRSVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEGGDQFIHEQNLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKP
ILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEAY

The query sequence (length=127) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4fyh:A 127 127 1.0000 1.0000 1.0000 6.12e-91 4fyh:B, 4fyh:C, 4fyi:A, 4fyi:C, 4fyk:B, 4fyk:D, 4kxl:B, 4kxn:B, 4kxn:C
2 2klh:A 152 142 0.9921 0.8289 0.8873 2.50e-86 4fyh:D, 4fyi:B, 4fyi:D, 4fyk:A, 4fyk:C, 2klh:B, 4kxl:A, 4kxl:C, 4kxl:D, 4kxm:A, 4kxm:B, 4kxm:C, 4kxm:D, 4kxn:A, 4kxn:D, 4p5d:C, 4p5d:A
3 8osc:B 126 125 0.8346 0.8413 0.8480 5.63e-73 8osc:A
4 8qhq:A 143 139 0.8425 0.7483 0.7698 5.44e-72 4p5e:A, 4p5e:B, 8qhq:B, 8qhq:C, 8qhq:D, 8qhq:E, 8qhq:F, 8qhr:A, 8qhr:B
5 2f17:A 255 62 0.1496 0.0745 0.3065 0.59 2f17:B, 1ig3:A, 1ig3:B
6 3s4y:A 224 51 0.1260 0.0714 0.3137 0.82 3s4y:B
7 8v4a:A 466 38 0.1024 0.0279 0.3421 0.99 9bnj:A, 9bnj:B, 9bnj:C, 9bnj:D, 8v2k:A, 8v2k:B, 8v2k:C, 8v2k:D, 8v4a:B, 8v4a:C, 8v4a:D, 8v6p:A, 8v6p:B, 8v6p:C, 8v6p:D, 8v9p:A, 8v9p:B, 8v9p:C, 8v9p:D, 5w19:A, 5w19:B, 5w19:C, 5w19:D
8 1f8y:A 156 64 0.1339 0.1090 0.2656 1.4 1f8y:B
9 8rh3:A 156 47 0.1496 0.1218 0.4043 2.8 8pqp:A, 8pqq:A, 8pqq:C, 8pqq:B, 8pqq:D, 8pqr:B, 8pqr:D, 8pqr:A, 8pqr:C, 8qc0:A, 8qc0:B, 8qc0:C, 8qc0:D, 8rh3:B, 8rh3:C, 8rh3:D
10 4nna:A 498 48 0.1339 0.0341 0.3542 3.9 4nnb:A, 4nnc:A
11 4xln:J 1367 52 0.1339 0.0124 0.3269 4.2 3aoh:D, 3aoh:N, 3aoi:D, 3aoi:N, 6asg:D, 4gzy:D, 4gzz:D, 5i2d:D, 5i2d:O, 4mq9:D, 7rdq:D, 4wqt:D, 4wqt:I, 4wqt:N, 4xlp:J, 4xlq:J, 4xlr:J, 4xls:J
12 1hqm:D 1175 52 0.1339 0.0145 0.3269 4.3 1i6v:D
13 5tjg:D 1475 52 0.1339 0.0115 0.3269 4.5
14 5x22:D 1438 35 0.0945 0.0083 0.3429 6.2
15 2a68:D 1392 35 0.0945 0.0086 0.3429 6.5 2a68:N, 2a69:D, 2a69:N, 2a6e:D, 2a6e:N, 2a6h:D, 2a6h:N, 2be5:D, 2be5:N, 2cw0:D, 2cw0:N, 1iw7:D, 1iw7:N, 1smy:D, 1smy:N, 1zyr:D, 1zyr:N
16 3dxj:D 1504 35 0.0945 0.0080 0.3429 6.5 6cuu:D, 5d4c:D, 5d4c:N, 5d4d:D, 5d4d:N, 5d4e:D, 5d4e:N, 3dxj:N, 5e17:D, 5e18:D, 7eh0:D, 7eh1:D, 7eh2:D, 7eh2:N, 4g7h:D, 4g7h:N, 4g7o:D, 4g7o:N, 4g7z:D, 4g7z:N, 6kqd:D, 6kqd:N, 6kqe:D, 6kqf:D, 6kqg:D, 6kqh:D, 6kql:D, 6kqm:D, 6kqn:D, 6l74:D, 6lts:D, 7mlb:D, 7mli:D, 7mlj:D, 4oin:D, 4oio:D, 4oip:D, 4oiq:D, 4oir:D, 6ovr:D, 6ovy:D, 6ow3:D, 6oy5:D, 6oy6:D, 6oy7:D, 6p70:D, 6p71:D, 4q4z:D, 4q5s:D, 5tmc:D, 5tmf:D, 5vo8:D, 5voi:D, 8w8n:D, 8w8o:D, 8w8p:D, 3wod:D, 6wox:D, 6woy:D, 5x21:D, 5x22:N, 5xj0:D, 4xln:D, 4xlp:D, 4xlq:D, 4xlr:D, 4xls:D, 1ynj:D, 1ynn:D
17 3eql:D 1321 35 0.0945 0.0091 0.3429 6.7 3eql:N, 8hsg:J, 8hsh:J, 8hsl:J, 8hsr:J, 6m6a:D, 6m6b:D, 6m6c:D, 2o5i:D, 2o5i:N, 2ppb:D, 2ppb:N
18 3aoh:I 1289 35 0.0945 0.0093 0.3429 6.8 3aoi:I
19 4wqs:N 1288 35 0.0945 0.0093 0.3429 6.9
20 2o5j:D 1264 35 0.0945 0.0095 0.3429 7.2 2o5j:N
21 4wqs:D 1151 35 0.0945 0.0104 0.3429 7.4
22 8hp4:A 540 41 0.0787 0.0185 0.2439 8.9 8hp4:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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