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BioLiP
>protein
RRSRRCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWM

The query sequence (length=51) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2j2s:A 72 51 1.0000 0.7083 1.0000 2.23e-32 2jyi:A, 2kkf:A, 4nw3:A
2 4pzi:A 61 48 0.5882 0.4918 0.6250 6.61e-15
3 5w9q:A 56 45 0.4706 0.4286 0.5333 6.33e-09 5w9q:B
4 3qmb:A 54 46 0.4510 0.4259 0.5000 9.09e-09 3qmc:A, 3qmd:A, 3qmg:A, 3qmh:A, 3qmi:A
5 4wxx:B 1178 48 0.4706 0.0204 0.5000 1.04e-06 3epz:A, 3epz:B, 7lmk:A, 7lmk:B, 7lmk:C, 7lmk:D, 7lmm:A, 7lmm:B, 7lmm:C, 7lmm:D, 3pta:A, 7sfc:A, 7sfd:A, 7sfe:A, 7sff:A, 7sfg:A, 5wvo:C, 4wxx:A, 6x9i:A, 6x9j:A, 6x9k:A, 7xi9:A, 7xib:A, 5ydr:B, 4yoc:A
6 3swr:A 965 45 0.4706 0.0249 0.5333 1.69e-06
7 3pt6:B 915 45 0.4902 0.0273 0.5556 2.31e-06 4da4:A, 3pt6:A, 6w8v:A
8 4hp1:C 51 49 0.3922 0.3922 0.4082 1.07e-04 4hp3:C
9 4bbq:A 111 44 0.4118 0.1892 0.4773 0.001 4bbq:B
10 5exh:C 45 49 0.3529 0.4000 0.3673 0.002 4z3c:C
11 4o64:A 116 45 0.4118 0.1810 0.4667 0.002 4o64:B, 4o64:C
12 5vc9:C 46 49 0.3529 0.3913 0.3673 0.008 5vc9:F
13 6asd:C 45 48 0.3725 0.4222 0.3958 0.018
14 6asb:I 121 29 0.2745 0.1157 0.4828 0.26 6asb:C, 6asb:L
15 6asb:F 85 30 0.2745 0.1647 0.4667 0.34
16 5w9s:C 44 49 0.3137 0.3636 0.3265 0.61
17 7evo:D 200 25 0.2157 0.0550 0.4400 1.2 8hk1:D, 6n3e:A, 6n3f:C, 6nsx:A
18 1oyw:A 516 14 0.1765 0.0174 0.6429 4.5 1oyy:A
19 4ylf:A 276 29 0.1765 0.0326 0.3103 5.0 4ylf:C, 4yry:A, 4yry:C
20 5d08:A 384 17 0.1569 0.0208 0.4706 6.7 5d08:B, 5d0a:A, 5d0a:B, 5d0a:C, 5d0a:D, 5d0b:A, 5d0b:B, 5t8y:B, 5t8y:A
21 4q47:A 513 19 0.1569 0.0156 0.4211 6.9 4q47:B, 4q48:A, 4q48:B
22 7tj9:A 1111 13 0.1373 0.0063 0.5385 8.3
23 2cd9:A 363 14 0.1569 0.0220 0.5714 8.4 2cd9:B, 2cda:A, 2cda:B, 2cdb:A, 2cdb:B, 2cdb:C, 2cdb:D, 2cdc:A, 2cdc:B, 2cdc:C, 2cdc:D
24 8r9b:A 301 13 0.1569 0.0266 0.6154 9.0 7b5o:J, 7b5q:J, 8orm:J, 8p4z:A, 8p4z:B, 8p6v:J, 8p6w:J, 8p6x:J, 8p6y:J, 8p6z:J, 8p70:J, 8p71:J, 8p72:J, 8p73:J, 8p74:J, 8p75:J, 8p76:J, 8p77:J, 8p78:J, 8p7l:J, 8plz:J, 8r99:A, 8r9a:A, 8r9b:B, 8r9b:C, 8r9b:D, 8r9o:A, 8r9o:B, 8r9s:A, 8r9s:B, 8r9u:A, 8r9u:B, 1ua2:A, 1ua2:B, 1ua2:C, 1ua2:D, 6xbz:J, 6xd3:J
25 8sor:A 1156 17 0.1569 0.0069 0.4706 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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