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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RRRLGVMGGTFDPIHNGHLVAASEVADRFALDEVIFVPTGQPRKVSPAEHRYLMTVIATASNPRFTVSRADIDRGGATYT
VDTLTDLRTAHPDADLYFITGADALASILSWENWEQLFTLAKFIGVSRPGYGLSLVEVPALAISSTDCRIRAGQARPIWY
LVPDGVVQYVAKHRLYSG

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4ymi:B 198 197 1.0000 0.8990 0.9036 3.44e-124 5db4:A, 5deo:A, 5deo:B, 5deo:C, 5deo:D, 5vir:A, 5vir:B, 4ymi:A
2 5db4:B 175 183 0.9551 0.9714 0.9290 1.30e-116
3 5das:A 198 194 0.7865 0.7071 0.7216 7.10e-99 6buv:B, 4s1o:A, 4ybr:A, 4ybr:B
4 5das:C 180 180 0.7753 0.7667 0.7667 4.71e-96 5das:B, 5das:D, 4s1o:B
5 1kaq:A 186 186 0.4045 0.3871 0.3871 4.80e-44 1kaq:B, 1kaq:C, 1kaq:D, 1kaq:E, 1kaq:F
6 3e27:C 189 188 0.3876 0.3651 0.3670 2.37e-41 3e27:A, 3e27:B, 3e27:D, 3hfj:A, 3hfj:B, 3mla:A, 3mla:B, 3mlb:A, 3mlb:B, 3mmx:B, 3mmx:C, 3mmx:A, 3mmx:D, 2qtn:B, 2qtr:A, 2qtr:B, 2qtr:C
7 8aih:A 184 182 0.3652 0.3533 0.3571 1.03e-40 8aii:A, 9fyb:A, 9fyb:B
8 1yum:A 212 208 0.3708 0.3113 0.3173 7.45e-30 1yum:B, 1yum:C, 1yum:D, 1yun:A, 1yun:B
9 4wso:A 227 138 0.3427 0.2687 0.4420 1.37e-28 4wso:B
10 2h2a:A 189 187 0.3034 0.2857 0.2888 1.14e-26 2h29:A, 2h29:B, 2h2a:B
11 1k4m:A 213 207 0.3315 0.2770 0.2850 1.25e-22 1k4m:B, 1k4m:C
12 5llt:A 205 200 0.2528 0.2195 0.2250 6.82e-09 5llt:B, 5lm3:A
13 1kqo:A 233 208 0.3371 0.2575 0.2885 1.49e-07 1gzu:A, 1gzu:B, 1gzu:C, 1kqn:A, 1kqn:B, 1kqn:C, 1kqn:D, 1kqn:E, 1kqn:F, 1kqo:B, 1kqo:C, 1kqo:D, 1kqo:E, 1kqo:F, 1kr2:A, 1kr2:B, 1kr2:C, 1kr2:D, 1kr2:E, 1kr2:F, 8qe8:4, 8qe8:3
14 1nup:A 213 205 0.2753 0.2300 0.2390 4.06e-04 1nup:B, 1nuq:A, 1nuq:B, 1nus:A, 1nus:B, 1nut:A, 1nut:B, 1nuu:A, 1nuu:B
15 3nd6:A 152 66 0.1348 0.1579 0.3636 0.027 3nd6:B, 3nd6:C, 3nd6:D, 3nd6:E, 3nd6:F, 3nd7:A, 3nd7:B, 3nd7:C, 3nd7:D, 3nd7:E, 3nd7:F
16 9iye:B 173 36 0.0899 0.0925 0.4444 0.33 8i8j:A, 8i8j:B, 8i8j:C, 8i8j:D, 8i8j:E, 8i8j:F, 8i8k:A, 8i8k:B, 8i8k:C, 8i8k:D, 8i8k:E, 8i8k:F, 8i8l:A, 8i8l:B, 8i8l:C, 8i8l:D, 8i8l:E, 8i8l:F, 8i8m:A, 8i8m:B, 8i8m:C, 8i8m:D, 8i8m:E, 8i8m:F, 8i8n:A, 8i8n:B, 8i8n:C, 8i8n:D, 8i8n:E, 8i8n:F, 8i8o:A, 8i8o:B, 8i8o:C, 8i8o:D, 8i8o:E, 8i8o:F, 9iye:A, 9iye:C, 9iye:D, 9iye:E, 9iye:F, 9iyf:A, 9iyf:B, 9iyf:C, 9iyf:D, 9iyf:E, 9iyf:F, 9iyh:A, 9iyh:B, 9iyh:C, 9iyh:D, 9iyh:E, 9iyh:F, 8zn2:A, 8zn2:B, 8zn2:C, 8zn2:D, 8zn2:E, 8zn2:F, 8zn3:A, 8zn3:B, 8zn3:C, 8zn3:D, 8zn3:E, 8zn3:F
17 3otw:A 157 63 0.1011 0.1146 0.2857 0.65 3otw:D, 3otw:B, 3otw:C, 3otw:E, 3otw:F
18 6cck:B 160 43 0.0843 0.0938 0.3488 0.70 1b6t:B, 6b7a:A, 6b7a:B, 6b7b:A, 6b7b:B, 6b7c:A, 6b7c:B, 6b7d:A, 6b7e:B, 6b7f:A, 6b7f:B, 6cck:A, 6ccl:A, 6ccl:B, 6ccm:A, 6ccn:A, 6ccn:B, 6cco:A, 6ccq:A, 6ccq:B, 6ccs:A, 6ccs:B, 6chl:A, 6chl:B, 6chm:A, 6chm:B, 6chn:A, 6chn:B, 6cho:A, 6cho:B, 6chp:A, 6chp:B, 6chq:A, 6ckw:A, 6ckw:B, 1gn8:A, 1gn8:B, 1h1t:A, 1h1t:B, 1qjc:B
19 4nah:C 160 31 0.0787 0.0875 0.4516 1.6 3f3m:A, 4nah:A, 4nah:B, 4nah:D, 4nah:E, 4nah:F, 4nat:A, 4nat:B, 4nat:C, 4nau:A, 4nau:B, 4nau:C
20 1f9a:A 164 31 0.0674 0.0732 0.3871 1.9 1f9a:B, 1f9a:C, 1f9a:D, 1f9a:E, 1f9a:F
21 8cli:C 579 51 0.0955 0.0294 0.3333 3.2 8clj:C, 8clj:H
22 5o08:A 160 62 0.1180 0.1313 0.3387 3.3 5o08:B, 5o08:C, 5o0a:A, 5o0a:B, 5o0a:C, 5o0b:A, 5o0b:B, 5o0b:C, 5o0c:A, 5o0c:B, 5o0c:C, 5o0d:B, 5o0d:C, 5o0f:B, 5o0f:C, 5o0h:B, 5o0h:C, 8qid:A, 8qid:B, 8qid:C, 8qix:B, 8qix:C, 8qiy:A, 8qiy:B, 8qj8:A, 8qj8:B, 8qj8:C, 7ywm:A, 7ywm:B, 7ywm:C, 7yxz:A, 7yxz:B, 7yxz:C, 7yy0:B, 7yy0:C, 7yy1:A, 7yy1:B, 7yy1:C, 7yy2:A, 7yy2:B, 7yy2:C, 7yy3:A, 7yy3:B, 7yy3:C, 7yy4:B, 7yy4:C, 7yy5:B, 7yy5:C, 7yy6:A, 7yy6:B, 7yy6:C, 7yy7:B, 7yy7:C, 7yy8:B, 7yy8:C, 7yy9:A, 7yy9:B, 7yy9:C, 7yya:A, 7yya:B, 7yyb:B, 7yyb:C, 7yyc:A, 7yyc:B, 7yyc:C
23 3l92:A 159 11 0.0562 0.0629 0.9091 4.5
24 1vlh:B 158 40 0.0843 0.0949 0.3750 4.8 1vlh:A, 1vlh:F, 1vlh:C, 1vlh:D, 1vlh:E
25 1lw7:A 344 19 0.0449 0.0233 0.4211 5.6
26 6a6d:A 163 27 0.0730 0.0798 0.4815 6.0 6a75:A, 6a7d:A, 8i8p:A, 6j3m:A, 6jnh:A, 6jog:A, 6kkw:A, 5yh7:A, 5yrr:A, 5zzc:A
27 3bxd:A 258 34 0.0618 0.0426 0.3235 8.8 2huo:A
28 2o1u:A 578 44 0.0787 0.0242 0.3182 9.0 2o1u:B, 2o1v:A, 2o1v:B, 1tbw:B, 1tc0:B, 1tc6:B, 1yt0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218