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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RRPPWDIARFRPALRVAKLQAPDSVQRKDVRSFPNFQADHFYSENRDMVFVMGGDSQRSELRFLDEWSVRTSSTRRMVGV
LTLPTPLRGMKHFTWMQVAGGSKGKKPLLRLSWHDKREQLRNTMLATVRLNNKSGDAGRFKKIVLGTRPSGRFVADVRVE
RSRLTVRLNGRKLVDEDVGYWTYSTNYFKAGVYVQEGSPDARVVFHGLTVS

The query sequence (length=211) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7w18:A 212 212 0.9953 0.9906 0.9906 3.66e-153 7w13:A
2 8pcx:A 232 221 0.3033 0.2759 0.2896 3.99e-17 8bjo:A, 8bxz:A, 8p6o:A, 8pc3:A, 8pc8:A, 8pdt:A, 8ped:A, 8qli:A, 8r43:A, 8rbn:A
3 7ncz:A 227 221 0.2986 0.2775 0.2851 4.88e-15 7nm6:A, 7npp:A, 7ny3:A, 7o6h:A, 7oof:A, 7ory:A, 7p25:A, 7p90:A, 7pbf:A
4 7c8f:A 266 234 0.2844 0.2256 0.2564 2.38e-12 7c8f:B
5 7w16:A 264 255 0.3033 0.2424 0.2510 5.15e-12
6 8rd8:dh 64 50 0.0806 0.2656 0.3400 2.3 8rdv:dh, 8rdw:dh
7 2x9o:A 233 36 0.0664 0.0601 0.3889 2.9
8 8w1o:K 1290 70 0.0853 0.0140 0.2571 3.2
9 5uth:A 306 31 0.0569 0.0392 0.3871 3.8 8cci:A, 8ccj:A, 8cck:A, 8ccl:A, 8ccm:A
10 8shj:C 306 37 0.0758 0.0523 0.4324 3.9 8t55:C
11 8shj:A 334 37 0.0758 0.0479 0.4324 4.3 8shj:B, 8t55:A, 8t55:B
12 1j6t:B 85 27 0.0521 0.1294 0.4074 6.9 1poh:A, 1vrc:C, 1vrc:D
13 6ecv:A 286 36 0.0664 0.0490 0.3889 8.0 6ecu:A, 6ecu:B, 6ecv:B, 6ecw:A, 6ecw:B
14 2zaa:A 232 207 0.2275 0.2069 0.2319 8.3 2cws:A, 2zab:A, 2zac:A
15 8bao:A 368 118 0.1517 0.0870 0.2712 9.0 8bao:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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