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BioLiP
>protein
RRNRRLSSASVYRYYLKRISMNIGTTGHVNGLSIAGNPEIMRAIARLSEQETYNWVTDYAPSHLAKEVVKQISGKYNIPG
AYQGLLMAFAEKVLANYILDYKGEPLVEIHHNFLWELMQGFIYTFVRKDGKPVTVDMSKVLTEIEDALFKLVKK

The query sequence (length=154) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6wq2:A 154 154 1.0000 1.0000 1.0000 2.46e-114 6wq2:B, 6wq2:C, 6wq2:D, 6wq2:E, 6wq2:F, 6wq2:G, 6wq2:H, 6wq2:I, 6wq2:J, 6wq2:K, 6wq2:L, 6wq2:M, 6wq2:N, 6wq2:P, 6wq2:R, 6wq2:T
2 7txj:A 153 151 0.6364 0.6405 0.6490 3.32e-69
3 5w7g:B 126 61 0.1104 0.1349 0.2787 0.005 5w7g:D, 5w7g:F, 5w7g:H, 5w7g:J, 5w7g:L, 5w7g:N, 5w7g:P, 5w7g:R, 5w7g:T, 5w7g:V, 5w7g:X, 5w7g:Z, 5w7g:b, 5w7g:d, 5w7g:f, 5w7g:h, 5w7g:j, 5w7g:l, 5w7g:n, 5w7g:p
4 7dwq:B 659 74 0.1494 0.0349 0.3108 0.075 7coy:aB, 7coy:bB, 7coy:cB
5 7yca:B 732 55 0.1234 0.0260 0.3455 0.082
6 6m5u:A 585 64 0.1234 0.0325 0.2969 0.39 4iox:C, 6m5v:A
7 6sg9:DG 566 90 0.1883 0.0512 0.3222 0.64 7pua:DG, 6sgb:DG
8 6lu1:B 713 69 0.1299 0.0281 0.2899 0.65
9 6vpv:B 737 55 0.1104 0.0231 0.3091 0.97 8am5:b, 8asl:b, 8asp:b, 6hqb:B, 4kt0:B, 4l6v:B, 4l6v:b, 4l6v:2, 6nwa:B, 6nwa:b, 6nwa:G, 7o1v:B, 5oy0:B, 5oy0:b, 5oy0:2, 7umh:B, 7umh:G, 7umh:b, 6uzv:B, 6uzv:b, 6uzv:2, 6vpv:b, 6vpv:2
10 6kmw:aB 740 55 0.1104 0.0230 0.3091 1.1 6kmw:cB, 6kmw:bB
11 7qco:B 734 55 0.1169 0.0245 0.3273 1.1 7qco:G, 7qco:g, 7qco:b
12 6qbt:A 148 82 0.1494 0.1554 0.2805 1.4 6qbv:B, 6qbv:C, 6qbv:D, 6qbw:A
13 7y5e:BN 732 55 0.1104 0.0232 0.3091 1.5 7y5e:B2, 7y7a:B7, 7y7a:Bo, 7y7b:B, 7y8a:B
14 8wm6:B 732 50 0.1104 0.0232 0.3400 1.9 8wmj:B, 8wmv:B, 8wmw:B
15 7a23:C 693 21 0.0649 0.0144 0.4762 2.1 7a24:C, 7aqr:G, 7ar7:G, 7ar8:G, 7arb:G, 8bed:G, 8bpx:G, 8bq5:G, 8bq6:G
16 8ud1:1P 342 48 0.1039 0.0468 0.3333 2.4 5gpn:p, 5gup:L, 8ueo:1P, 8uep:1P, 8ueq:1P, 8uer:1P, 8ues:1P, 8uet:1P, 8ueu:1P, 8uev:1P, 8uew:1P, 8uex:1P, 8uey:1P, 8uez:1P, 8ugh:1P, 8ugi:1P, 8ugj:1P, 8ugn:1P, 8ugn:5P, 8ugr:1P, 8ugr:5P, 7v2c:J, 7v2e:J, 7v2h:J, 7v2k:J, 7v2r:J, 7v31:J, 7v33:J, 7vb7:J, 7vbn:J, 7vbz:J, 7vxp:J, 7vy8:J, 7vyf:J, 7vyn:J, 7vzv:J, 7vzw:J, 7w0r:J, 7w0y:J, 7w1t:J, 7w1u:J, 7w1v:J, 7w1z:J, 7w20:J, 7w2r:J, 7w2u:J, 7w2y:J, 7w31:J, 7w32:J, 7w35:J, 7w4c:J, 7w4d:J, 7w4e:J, 7w4f:J, 7w4g:J
17 6k61:B 740 55 0.1039 0.0216 0.2909 2.6 6jeo:aB, 6jeo:bB, 6jeo:cB, 6jeo:dB, 6k61:b, 6tcl:B1, 6tcl:B2, 6tcl:B, 6tcl:BB, 7y3f:B
18 6x89:S1 688 21 0.0584 0.0131 0.4286 3.3 8e73:S1
19 7lx0:H 739 55 0.1169 0.0244 0.3273 3.3 7lx0:b, 7lx0:B, 6pnj:H, 6pnj:B, 6pnj:b
20 7dr0:B 706 53 0.1104 0.0241 0.3208 3.5 7dr1:B, 7dr2:aB, 7dr2:bB, 7dr2:cB, 7dr2:dB
21 7fix:B1 740 55 0.1039 0.0216 0.2909 3.5 7bw2:B, 4fe1:B, 7fix:B2, 7fix:B3, 1jb0:B, 6k33:aB, 6k33:bB, 6k33:cB, 7m75:B, 7m76:B, 7m78:B, 3pcq:B, 6pfy:H, 6pfy:B, 6pfy:Z, 6pgk:H, 6pgk:B, 6pgk:Z, 6tra:B, 6trc:B, 6trc:b, 6trc:2, 6trd:B, 6trd:b, 6trd:2, 5zf0:B1, 5zf0:B2, 5zf0:B3, 5zf0:B4, 5zf0:B6, 5zf0:B5
22 6wmp:D 1159 71 0.1234 0.0164 0.2676 3.5 6wmr:D, 6wmt:D
23 7wfd:AB 734 55 0.0974 0.0204 0.2727 4.5 8bcv:B, 8bcw:B, 7dkz:B, 7ew6:B, 7ewk:B, 7f9o:B, 7f9o:f, 8htu:B, 8j6z:B, 8j7a:B, 8j7b:B, 7ksq:B, 7kux:B, 6l35:B, 5l8r:B, 3lw5:B, 2o01:B, 4rku:B, 7wfe:BB, 7wg5:AB, 7wg5:BB, 8wgh:B, 2wsc:B, 2wse:B, 2wsf:B, 4xk8:B, 4xk8:b, 7xqp:B, 4y28:B, 6yac:B, 6yez:B, 5zji:B, 6zoo:B, 6zxs:B
24 7d0j:B 734 50 0.0974 0.0204 0.3000 4.8 7a4p:B, 7bgi:B, 7blx:B, 8cmo:B, 7dz7:B, 7dz8:B, 8h2u:B, 6ijj:B, 6ijo:B, 6jo5:B, 6jo6:B, 6qph:B, 7r3k:B, 6rhz:B, 6sl5:B, 7wyi:B, 7wzn:B, 6yxr:B, 7zq9:B, 7zqc:B, 7zqd:B, 7zqd:B2, 6zzx:B, 6zzy:B
25 7s3d:B 742 55 0.1039 0.0216 0.2909 4.8 7s3d:H, 7s3d:b
26 2zze:A 744 73 0.1429 0.0296 0.3014 4.9 2zze:B, 2zzf:A, 2zzg:A, 2zzg:B
27 5egi:B 233 35 0.0844 0.0558 0.3714 5.0 5egi:A, 5egi:C
28 8gym:s1 689 21 0.0584 0.0131 0.4286 5.7 8b6f:AB, 8bqs:AB, 8gym:S1, 8gzu:s1, 8gzu:S1, 7tgh:S1
29 1obf:O 335 30 0.0909 0.0418 0.4667 7.2 1obf:P
30 7blz:B 731 47 0.0974 0.0205 0.3191 7.4 6fos:B, 8wey:B, 5zgb:B, 5zgh:B
31 6kif:B 733 53 0.1039 0.0218 0.3019 7.7 6kif:H, 6kif:f, 6kig:B, 6kig:H, 6kig:f
32 5j0n:F 356 75 0.1169 0.0506 0.2400 9.0 5j0n:E, 5j0n:G, 5j0n:H, 1p7d:A, 1p7d:B, 2wcc:3, 1z19:B, 1z19:A, 1z1b:B, 1z1b:A, 1z1g:A, 1z1g:D, 1z1g:B, 1z1g:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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