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BioLiP
>protein
RRNPCKFEIRGHCLNGKRCHFSHNYFEWPPHALLVRQNFMLNRILKSMDKSIDEISGAAELDRTEEYALGVVGVLESYIG
SINNITKQSACVAMSKLLTELNSDDIKKLRDNEELNSPKIRVYNTVISYIESNRKNNKQTIHLLKRLPADVLKKTIKNTL
DIHKSITIN

The query sequence (length=169) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4c3b:C 178 172 1.0000 0.9494 0.9826 3.90e-123 4c3b:A, 4c3b:B, 4c3b:D, 4c3b:E, 4c3b:F, 4c3b:G, 4c3b:H, 4c3b:I, 4c3b:J, 4c3b:K, 4c3b:L, 4c3b:M, 4c3b:N, 4c3b:O, 4c3b:P, 4c3e:A, 4c3e:B, 4c3e:C, 4c3e:D, 4c3e:E, 4c3e:F, 4c3e:G, 4c3e:H, 4c3e:I, 4c3e:J, 4c3e:K, 4c3e:L, 4c3e:M, 4c3e:N, 4c3e:O, 4c3e:P, 6g0y:F, 6g0y:E, 6g0y:A, 6g0y:C, 6pzq:B, 6pzq:D
2 6pzq:A 157 169 0.9172 0.9873 0.9172 9.39e-111 6pzq:C
3 4cs7:C 172 164 0.3728 0.3663 0.3841 1.31e-39 4cs7:A, 4cs7:B, 4cs7:E, 4cs8:A, 4cs8:B, 4cs8:C, 4cs8:E, 4cs9:A, 4cs9:B, 4cs9:C, 4cs9:E, 4csa:C, 4csa:A, 4csa:B, 4csa:E
4 2cqe:A 98 22 0.0651 0.1122 0.5000 1.1
5 2cqe:A 98 26 0.0592 0.1020 0.3846 9.3
6 7vfs:A 1266 48 0.0769 0.0103 0.2708 1.2 7vfu:A, 7vfv:A, 7vfw:A
7 7mix:A 1326 48 0.0769 0.0098 0.2708 1.2 7miy:A
8 8x90:A 1377 48 0.0769 0.0094 0.2708 1.2 8x91:A, 8x93:A
9 6xr0:M 683 45 0.0888 0.0220 0.3333 1.8
10 7k95:A 53 29 0.0710 0.2264 0.4138 2.1 7zyh:A, 7zyh:D, 7zyh:G, 7zyh:J
11 7xlq:A 1319 54 0.0651 0.0083 0.2037 2.7 8epl:A, 7yg5:A
12 2zba:D 391 49 0.0947 0.0409 0.3265 3.3
13 2zba:A 435 49 0.0947 0.0368 0.3265 3.5 2zba:B, 2zba:C
14 3kak:B 437 43 0.1006 0.0389 0.3953 4.8
15 8ro0:O 342 110 0.1716 0.0848 0.2636 5.0 8ro1:O
16 3kal:A 470 43 0.1006 0.0362 0.3953 5.1 3kak:A, 3kal:B
17 5gp4:A 441 33 0.0592 0.0227 0.3030 5.4 5gp4:C, 5gp4:B
18 6pwy:B 513 38 0.0828 0.0273 0.3684 7.5 6pwy:A, 6pwy:D, 6pwy:C
19 6eji:A 360 86 0.1183 0.0556 0.2326 7.9 6eji:B, 6ejj:A, 6ejj:B, 6ejk:A, 6ejk:B
20 4ii1:B 139 21 0.0533 0.0647 0.4286 8.4 4ii1:A, 4ii1:C, 4ii1:D
21 8ch6:U 295 92 0.1302 0.0746 0.2391 8.4 7a5p:P, 8c6j:M, 6ff4:P, 6ff7:P, 9fmd:O, 8i0p:O, 8i0r:O, 8i0s:O, 8i0t:O, 8i0u:O, 8i0v:O, 8i0w:O, 6icz:O, 6id0:O, 6id1:O, 5mqf:P, 6qdv:M, 7qtt:U, 8ro2:O, 7w59:O, 7w5a:O, 7w5b:O, 5xjc:O, 5yzg:O, 5z56:O, 5z57:O, 6zym:P
22 2d9n:A 77 21 0.0592 0.1299 0.4762 8.6 2rhk:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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