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BioLiP
>protein
RRNPCKFEIRGHCLNGKRCHFSHNYFEWPPHALLVRQNFMLNRILKSMDKAELDRTEEYALGVVGVLESYIGSINNITKQ
SACVAMSKLLTELNSDDIKKLRDNEELNSPKIRVYNTVISYIESNRKNNKQTIHLLKRLPADVLKKTIKNTLDIHKSITI
N

The query sequence (length=161) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4c3b:C 178 172 1.0000 0.9045 0.9360 7.88e-116 4c3b:A, 4c3b:B, 4c3b:D, 4c3b:E, 4c3b:F, 4c3b:G, 4c3b:H, 4c3b:I, 4c3b:J, 4c3b:K, 4c3b:L, 4c3b:M, 4c3b:N, 4c3b:O, 4c3b:P, 4c3e:A, 4c3e:B, 4c3e:C, 4c3e:D, 4c3e:E, 4c3e:F, 4c3e:G, 4c3e:H, 4c3e:I, 4c3e:J, 4c3e:K, 4c3e:L, 4c3e:M, 4c3e:N, 4c3e:O, 4c3e:P, 6g0y:F, 6g0y:E, 6g0y:A, 6g0y:C, 6pzq:B, 6pzq:D
2 6pzq:A 157 161 0.9627 0.9873 0.9627 8.15e-112 6pzq:C
3 4cs7:C 172 164 0.3727 0.3488 0.3659 1.60e-36 4cs7:A, 4cs7:B, 4cs7:E, 4cs8:A, 4cs8:B, 4cs8:C, 4cs8:E, 4cs9:A, 4cs9:B, 4cs9:C, 4cs9:E, 4csa:C, 4csa:A, 4csa:B, 4csa:E
4 2cqe:A 98 22 0.0683 0.1122 0.5000 0.93
5 2cqe:A 98 26 0.0621 0.1020 0.3846 9.1
6 6xr0:M 683 44 0.0932 0.0220 0.3409 0.95
7 7k95:A 53 29 0.0745 0.2264 0.4138 2.0 7zyh:A, 7zyh:D, 7zyh:G, 7zyh:J
8 8dmf:A 718 45 0.0745 0.0167 0.2667 2.5 7uvp:A
9 2zba:D 391 49 0.0994 0.0409 0.3265 3.4
10 7yb9:A 430 114 0.1739 0.0651 0.2456 3.5 7bmi:A, 7bmj:A, 7bmj:C, 7e6j:A, 5jqy:A, 5jtc:A, 5jz6:A, 5jz8:A, 5jza:A, 5jzu:A, 6q9f:A, 6q9i:A, 6rk9:A, 6rk9:B, 7yb8:A, 7yba:A, 7ybb:A, 7ybc:A, 6yyu:A, 6yyv:A, 6yyw:A, 6yyx:A, 6yyy:A, 6z6q:A, 6z6r:A
11 2zba:A 435 49 0.0994 0.0368 0.3265 3.6 2zba:B, 2zba:C
12 5gp4:A 441 33 0.0621 0.0227 0.3030 4.3 5gp4:C, 5gp4:B
13 3kak:B 437 43 0.1056 0.0389 0.3953 4.6
14 3kal:A 470 43 0.1056 0.0362 0.3953 5.0 3kak:A, 3kal:B
15 6pwy:B 513 38 0.0870 0.0273 0.3684 6.3 6pwy:A, 6pwy:D, 6pwy:C
16 8ro0:O 342 36 0.0870 0.0409 0.3889 6.5 8ro1:O
17 4ii1:B 139 21 0.0559 0.0647 0.4286 9.1 4ii1:A, 4ii1:C, 4ii1:D
18 2d9n:A 77 21 0.0621 0.1299 0.4762 9.1 2rhk:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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