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BioLiP
>protein
RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ql2:B 59 57 1.0000 0.9661 1.0000 8.90e-37 2ql2:D
2 8osb:B 66 57 0.4737 0.4091 0.4737 5.10e-11
3 2ypa:A 67 56 0.4561 0.3881 0.4643 4.61e-10 2ypb:A
4 1mdy:A 68 57 0.3860 0.3235 0.3860 1.22e-04 1mdy:B, 1mdy:C, 1mdy:D
5 7z5i:A 56 54 0.3684 0.3750 0.3889 1.77e-04 7z5i:B, 7z5k:A, 7z5k:B
6 6od3:A 62 58 0.3684 0.3387 0.3621 0.023 6od3:B, 6od3:H, 6od3:E, 6od3:F, 6od4:A, 6od4:B, 6od5:A, 6od5:B, 6od5:C, 6od5:D, 8osb:A
7 2ypb:B 74 58 0.3509 0.2703 0.3448 0.092 2ql2:A, 2ql2:C, 2ypa:B
8 4b18:A 427 24 0.1754 0.0234 0.4167 3.7 6wx9:A
9 8ffz:C 797 25 0.1579 0.0113 0.3600 3.8
10 5a43:B 126 44 0.2456 0.1111 0.3182 4.4 5a43:A, 6b24:A, 6b24:B, 6b2a:A, 6b2a:B, 6b2b:A, 6b2b:B, 6b2d:A, 6b2d:B, 6bx4:A, 6bx4:B, 6bx5:A, 6bx5:B, 5kbn:A, 5kbn:B, 7kk8:A, 7kk8:B, 7kk9:A, 7kk9:B, 7kka:A, 7kka:B, 7kkb:A, 7kkb:B, 7kkr:A, 7kkr:B, 5kom:A, 5kom:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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