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BioLiP
>protein
RRMANNARERVRVRDINEAFRELGRMCQLHLKAQTKLLILQQAVQVILGLEQQVRE

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ypb:B 74 59 0.9821 0.7432 0.9322 1.25e-31 2ql2:A, 2ql2:C, 2ypa:B
2 6od3:A 62 59 0.8750 0.7903 0.8305 4.51e-27 6od3:B, 6od3:H, 6od3:E, 6od3:F, 6od4:A, 6od4:B, 6od5:A, 6od5:B, 6od5:C, 6od5:D, 8osb:A
3 1mdy:A 68 57 0.3750 0.3088 0.3684 0.005 1mdy:B, 1mdy:C, 1mdy:D
4 2ypa:A 67 49 0.3393 0.2836 0.3878 0.013 2ypb:A
5 2ql2:B 59 58 0.3571 0.3390 0.3448 0.023 2ql2:D
6 7z5i:A 56 54 0.3571 0.3571 0.3704 0.081 7z5i:B, 7z5k:A, 7z5k:B
7 3ubt:Y 328 49 0.3393 0.0579 0.3878 0.36 1dct:A, 1dct:B, 3ubt:B, 3ubt:A
8 8osk:M 316 47 0.2143 0.0380 0.2553 0.92 4h10:B, 8osl:M, 8osl:O
9 8fgw:C 1342 50 0.2321 0.0097 0.2600 1.2 8fh3:C
10 8osb:B 66 25 0.1964 0.1667 0.4400 3.3
11 3bb8:A 420 21 0.1607 0.0214 0.4286 4.2 3bb8:B
12 4ho9:A 294 26 0.1429 0.0272 0.3077 7.0 4ho3:A, 4ho4:A, 4ho5:A, 4ho5:B, 4ho6:A, 4ho8:A, 4ho8:B, 4ho8:C, 4ho8:D, 4ho9:B, 4hoc:A, 4hoc:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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