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BioLiP
>protein
RRMANNARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLEQQVRE

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6od3:A 62 59 1.0000 0.9516 1.0000 6.06e-37 6od3:B, 6od3:H, 6od3:E, 6od3:F, 6od4:A, 6od4:B, 6od5:A, 6od5:B, 6od5:C, 6od5:D, 8osb:A
2 2ypb:B 74 59 0.8644 0.6892 0.8644 4.02e-31 2ql2:A, 2ql2:C, 2ypa:B
3 2ypa:A 67 50 0.3390 0.2985 0.4000 5.98e-04 2ypb:A
4 7z5i:A 56 55 0.3390 0.3571 0.3636 0.007 7z5i:B, 7z5k:A, 7z5k:B
5 2ql2:B 59 59 0.3559 0.3559 0.3559 0.020 2ql2:D
6 1mdy:A 68 59 0.3559 0.3088 0.3559 0.069 1mdy:B, 1mdy:C, 1mdy:D
7 8osb:B 66 35 0.2542 0.2273 0.4286 0.11
8 1q3i:A 192 40 0.2034 0.0625 0.3000 0.28
9 4ho9:A 294 26 0.1525 0.0306 0.3462 3.8 4ho3:A, 4ho4:A, 4ho5:A, 4ho5:B, 4ho6:A, 4ho8:A, 4ho8:B, 4ho8:C, 4ho8:D, 4ho9:B, 4hoc:A, 4hoc:B
10 4bqk:A 424 38 0.2373 0.0330 0.3684 5.0 4b8o:A, 4b8p:A, 4b8p:B, 4bpl:A, 4bqk:B, 2yns:A, 2yns:B
11 7zap:A 97 26 0.1525 0.0928 0.3462 6.3
12 1epz:A 183 36 0.2373 0.0765 0.3889 7.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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