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BioLiP
>protein
RRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPESRIQIWFQNRRARHPGQ

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6e8c:A 135 56 0.9655 0.4148 1.0000 1.07e-33 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
2 6e8c:A 135 48 0.4483 0.1926 0.5417 1.67e-12 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
3 8ejo:A 56 55 0.5345 0.5536 0.5636 5.14e-18 8ejo:B, 8ejp:A, 8ejp:B
4 1fjl:A 65 54 0.5517 0.4923 0.5926 1.04e-16 1fjl:B, 1fjl:C
5 3cmy:A 60 58 0.5172 0.5000 0.5172 5.04e-14
6 3a01:F 61 58 0.5000 0.4754 0.5000 5.17e-14 3a01:B, 3lnq:A
7 8osb:E 62 53 0.4483 0.4194 0.4906 1.42e-13
8 2lkx:A 68 54 0.4138 0.3529 0.4444 6.50e-12
9 9b8u:B 66 50 0.4310 0.3788 0.5000 7.47e-12 9b8u:A, 9b8u:C, 9b8u:D
10 5hod:A 61 54 0.3966 0.3770 0.4259 1.24e-09 5hod:D
11 1jgg:A 57 57 0.4310 0.4386 0.4386 6.66e-09 1jgg:B
12 4rdu:D 62 54 0.3621 0.3387 0.3889 6.82e-09 4rdu:A, 4xrs:I, 4xrs:G
13 1ig7:A 58 54 0.3793 0.3793 0.4074 1.50e-08
14 8eml:A 58 57 0.3793 0.3793 0.3860 2.48e-08 8eml:B
15 2me6:A 71 54 0.3621 0.2958 0.3889 3.60e-08
16 6m3d:C 108 51 0.3793 0.2037 0.4314 9.92e-08 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
17 6m3d:C 108 53 0.3793 0.2037 0.4151 1.89e-07 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
18 8pna:A 67 58 0.3276 0.2836 0.3276 2.33e-07 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
19 8ik5:C 67 54 0.3966 0.3433 0.4259 4.35e-07 8ike:C, 8ilw:C
20 6es3:K 72 51 0.3621 0.2917 0.4118 5.22e-07 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
21 4qtr:C 57 51 0.3793 0.3860 0.4314 6.83e-07 4qtr:A, 4qtr:B, 4qtr:D
22 2r5z:A 75 53 0.3793 0.2933 0.4151 2.36e-06 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
23 1zq3:P 68 58 0.3793 0.3235 0.3793 4.63e-06
24 5zjr:A 64 55 0.3621 0.3281 0.3818 6.31e-06 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
25 2h1k:B 60 54 0.3793 0.3667 0.4074 1.41e-05 2h1k:A
26 3a01:A 78 54 0.3276 0.2436 0.3519 1.41e-05 3a01:E
27 1puf:A 77 54 0.3621 0.2727 0.3889 1.63e-05 2lp0:A
28 1nk2:P 77 54 0.3448 0.2597 0.3704 1.63e-05 1nk3:P
29 2ld5:A 67 55 0.3276 0.2836 0.3455 2.57e-05
30 1lfu:P 82 58 0.3448 0.2439 0.3448 2.83e-05 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
31 3rkq:A 58 54 0.3103 0.3103 0.3333 2.84e-05 3rkq:B
32 1b72:A 68 53 0.3276 0.2794 0.3585 4.66e-05
33 1ahd:P 68 54 0.3621 0.3088 0.3889 8.30e-05
34 5eea:G 63 55 0.3276 0.3016 0.3455 1.04e-04 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
35 4uus:A 67 51 0.3276 0.2836 0.3725 2.36e-04 4uus:E
36 4cyc:A 66 51 0.3276 0.2879 0.3725 3.32e-04 1b8i:A
37 4rbo:A 55 50 0.2069 0.2182 0.2400 6.98e-04 4rbo:D
38 5flv:M 229 45 0.2759 0.0699 0.3556 0.001 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
39 3d1n:I 150 52 0.2931 0.1133 0.3269 0.005 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
40 1le8:A 53 51 0.2069 0.2264 0.2353 0.012 1akh:A, 1yrn:A
41 4egc:A 539 36 0.2241 0.0241 0.3611 0.027
42 3l1p:A 147 54 0.2759 0.1088 0.2963 0.030 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
43 8g8e:X 140 54 0.2586 0.1071 0.2778 0.094 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
44 1gt0:C 137 55 0.2414 0.1022 0.2545 0.095 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
45 5wc9:A 136 53 0.2586 0.1103 0.2830 0.33 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
46 8bx1:A 127 36 0.1897 0.0866 0.3056 0.44
47 4xrm:B 64 31 0.1897 0.1719 0.3548 0.94 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
48 6lxd:A 918 37 0.2586 0.0163 0.4054 1.6 9asm:A, 9asn:A, 9aso:A, 9asp:A, 9asq:A, 6v5b:A, 6v5c:A
49 7ly7:A 908 51 0.2759 0.0176 0.3137 3.0
50 5b16:A 722 37 0.2586 0.0208 0.4054 4.2
51 6bfy:A 439 33 0.2414 0.0319 0.4242 4.5 6bfy:B, 6bfy:C, 6bfy:F, 6bfy:D, 6bfy:E, 6bfz:A, 6bfz:B, 6bfz:E, 6bfz:F, 6bfz:D, 6bfz:C, 6d3q:A, 6d3q:C, 6d3q:B, 6d3q:E, 6d3q:F, 6d3q:D, 1e9i:A, 1e9i:B, 1e9i:C, 1e9i:D, 2fym:A, 2fym:C, 2fym:D, 2fym:F, 3h8a:A, 3h8a:B, 3h8a:C, 3h8a:D, 6npf:A, 6npf:B, 6npf:C, 6npf:D, 6npf:F, 6npf:E, 5ohg:A, 5ohg:B, 5ohg:H, 5ohg:I
52 6lxe:A 768 37 0.2586 0.0195 0.4054 6.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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