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BioLiP
>protein
RRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEK

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2wt7:A 63 53 1.0000 0.8413 1.0000 9.97e-31 1a02:F, 1fos:E, 1fos:G, 1s9k:D
2 5vpe:A 67 46 0.6792 0.5373 0.7826 3.94e-13 5vpe:C, 5vpf:A, 5vpf:C
3 7x5e:B 106 40 0.3396 0.1698 0.4500 0.004 7x5e:F, 7x5f:B, 7x5f:F, 7x5g:B, 7x5g:F
4 5vpe:D 67 48 0.3208 0.2537 0.3542 0.17 5vpe:B, 5vpf:B, 5vpf:D
5 1t2k:D 61 42 0.2453 0.2131 0.3095 0.41
6 4eot:A 92 46 0.2642 0.1522 0.3043 0.61 4eot:B
7 7mq8:LR 773 32 0.2264 0.0155 0.3750 1.2 7mq9:LR, 7mqa:LR
8 6pre:A 386 31 0.1698 0.0233 0.2903 2.1 2i58:A, 2i58:B, 6pql:A, 6pql:B, 6pql:C, 6pql:D, 6pre:B, 6pre:C, 6pre:D, 6prg:A, 6prg:B
9 2dq0:A 447 50 0.3019 0.0358 0.3200 2.2 2dq0:B, 2zr2:A, 2zr2:B
10 1skn:P 74 23 0.2075 0.1486 0.4783 7.2
11 8hbh:B 577 38 0.3019 0.0277 0.4211 9.2 7d9r:B, 7d9s:B, 7d9t:B, 7d9u:B, 8hbe:B, 8hbf:B, 6jt0:B, 6jt1:B, 6jt2:B, 5mnw:A
12 6p81:A 440 27 0.2264 0.0273 0.4444 9.7 7az5:A, 7az5:B, 7az5:C, 7az5:D, 7az6:A, 7az7:A, 7az8:A, 7az8:B, 7azc:A, 7azc:C, 7azc:B, 7azc:D, 7azd:A, 7azd:B, 7azd:D, 7azd:C, 7aze:A, 7aze:B, 7azf:A, 7azf:D, 7azf:B, 7azf:C, 7azg:A, 7azg:C, 7azg:B, 7azg:D, 7azg:E, 7azg:G, 7azg:F, 7azg:H, 7azk:A, 7azk:B, 7azk:C, 7azk:D, 7azl:A, 7azl:B, 7azl:C, 7azl:D, 3bep:B, 3bep:A, 8cix:A, 8ciy:A, 8ciz:A, 8ciz:B, 3d1e:A, 3d1f:A, 3d1f:B, 3d1g:A, 3d1g:B, 3f1v:A, 3f1v:B, 6fvl:A, 6fvl:B, 6fvl:C, 6fvl:D, 6fvm:A, 6fvm:B, 5jne:C, 5jne:G, 4k3k:A, 4k3k:B, 4k3l:A, 4k3l:B, 4k3m:A, 4k3m:B, 4k3o:A, 4k3o:B, 4k3p:A, 4k3q:A, 4k3q:B, 4k3r:A, 4k3s:A, 4k74:A, 4k74:B, 5m1s:C, 4mjp:B, 4mjq:A, 4mjq:B, 4mjr:A, 4mjr:B, 4n94:A, 4n94:B, 4n95:A, 4n96:A, 4n96:B, 4n97:A, 4n97:B, 4n98:A, 4n98:B, 4n99:A, 4n99:B, 4n9a:A, 4n9a:B, 1ok7:B, 4ovf:A, 4ovf:B, 4ovg:A, 4ovg:B, 4ovh:A, 8pat:A, 8pay:A, 4pnu:A, 4pnu:B, 4pnv:A, 4pnv:B, 4pnw:A, 4pnw:B, 3q4j:B, 3q4j:C, 3q4j:D, 3q4j:E, 3q4j:F, 3q4k:A, 3q4k:B, 3q4l:A, 3q4l:B, 3qsb:A, 3qsb:B, 3v62:A, 3v62:D, 8var:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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