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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5mmi:Y 77 77 1.0000 1.0000 1.0000 4.29e-52 6eri:AX, 5h1s:Y, 5mlc:Y, 5mmm:Y, 5x8p:Y, 5x8t:Y
2 4v61:BY 76 76 0.8831 0.8947 0.8947 1.87e-47
3 8rd8:WD 76 76 0.4416 0.4474 0.4474 2.45e-17 8rdv:WD, 8rdw:WD
4 8cd1:X 77 65 0.3896 0.3896 0.4615 1.80e-16 6spb:X, 6spd:X, 6spf:X, 6spg:X, 7unr:Z, 7unu:Z, 7unv:Z, 7unw:Z
5 7uvx:W 78 76 0.4416 0.4359 0.4474 6.23e-16 7m4v:W, 7m4w:W, 7m4x:W, 7m4y:W, 7m4z:W, 7ryf:W, 7ryg:W, 7ryh:W, 7uvv:W, 7uvw:W, 7uvy:W, 7uvz:W, 7uw1:W, 6v39:W, 6v3a:W, 6v3b:W, 6v3d:W, 6yhs:T, 6ysi:T
6 7jil:X 76 69 0.4156 0.4211 0.4638 1.98e-13
7 8a3l:w 77 65 0.3766 0.3766 0.4462 2.17e-13 7abz:X, 7ac7:X, 7acj:X, 7acr:X, 5ady:X, 5afi:X, 8akn:w, 8am9:w, 8ana:w, 8ap4:w, 9ax7:w, 9ax8:1, 8aye:w, 8b0x:w, 7b5k:X, 8b7y:f, 8bf7:U, 8bge:U, 8bgh:U, 8bh4:U, 8bhj:U, 8bhl:U, 8bhn:U, 8bhp:U, 8bil:U, 8bim:U, 7bl2:X, 7bl3:X, 7bl4:X, 7bl5:X, 7bl6:X, 6bu8:26, 7bv8:Y, 6by1:CX, 6by1:DX, 6c4i:Y, 8c8x:X, 8c8y:X, 8c8z:X, 8cam:w, 8ceu:w, 8cgd:w, 8cgk:w, 8cgv:w, 9cg5:w, 9cg6:w, 9cg7:w, 7cpj:X, 4csu:0, 7d6z:X, 7d80:v, 6dnc:BA, 8eiu:w, 8ekc:Z, 8emm:w, 6enf:X, 6enj:X, 6enu:X, 9fbv:w, 8fiz:DE, 8fto:w, 8fzd:Z, 8fze:Z, 8fzf:Z, 8fzg:Z, 8fzh:Z, 8fzi:Z, 8fzj:Z, 8g2u:X, 8g31:X, 8g34:X, 8g38:X, 8g6w:w, 8g6x:w, 8g6y:w, 8g7p:Z, 8g7q:Z, 8g7r:Z, 8g7s:Z, 5gad:Y, 5gae:Y, 5gaf:Y, 5gag:Y, 5gah:Y, 6gbz:X, 6gc0:X, 6gc4:X, 6gc8:X, 6gwt:X, 6gxm:X, 6gxn:X, 6gxo:X, 6gxp:X, 6h4n:X, 5h5u:Y, 6h58:X, 6h58:XX, 6hrm:X, 8hsp:w, 8htz:w, 8hu1:w, 6i0y:X, 6i7v:DY, 6i7v:CY, 8ifb:w, 8ifc:w, 5iqr:X, 5it8:CY, 5it8:DY, 8j1z:w, 3j5l:X, 5j5b:CY, 5j5b:DY, 3j7z:X, 5j7l:CY, 5j7l:DY, 3j8g:0, 5j88:CY, 5j88:DY, 5j8a:CY, 5j8a:DY, 3j9y:X, 3j9z:LV, 5j91:CY, 5j91:DY, 3ja1:LZ, 3jbu:0, 3jbv:0, 3jcd:X, 3jce:X, 3jcj:W, 3jcn:X, 5jc9:CY, 5jc9:DY, 7jss:x, 7jsw:x, 7jsz:x, 5jte:BX, 7jt1:x, 7jt2:x, 7jt3:x, 5ju8:BX, 7k00:w, 7k50:x, 7k51:x, 7k52:x, 7k53:x, 7k54:x, 7k55:x, 5kcr:11, 5kcs:11, 5kps:X, 5kpv:W, 5kpw:W, 5kpx:W, 5l3p:1, 6lkq:f, 7lv0:x, 7lvk:f, 5lza:X, 5lzb:X, 5lzc:X, 5lzd:X, 5lze:X, 5lzf:X, 7m5d:X, 5mdv:X, 5mdw:X, 5mdy:X, 5mdz:X, 5mgp:X, 7n1p:Lb, 7n2c:Lb, 7n2u:Lb, 7n2v:Lb, 7n30:Lb, 7n31:Lb, 7nbu:w, 5nco:Y, 5np6:v, 7nso:X, 7nsp:X, 7nsq:X, 5nwy:k, 7nwt:X, 7nww:W, 7o19:BX, 7o1a:BX, 7o1c:BX, 5o2r:X, 6o9k:1, 6ofx:x, 6og7:x, 6ogf:x, 6ogg:x, 6ogi:x, 7oif:W, 7oig:W, 7oii:W, 7oiz:w, 7oj0:w, 6om6:X, 6ore:X, 6orl:X, 6osk:X, 6osq:X, 6ost:X, 6ot3:X, 7ot5:W, 7otc:X, 6ouo:X, 8p16:X, 8p17:X, 8p18:X, 7p3k:w, 8peg:1, 8phj:w, 6pj6:f, 7pjs:X, 7pjt:X, 7pju:X, 7pjv:X, 7pjw:X, 7pjx:X, 7pjy:X, 7pjz:X, 8pkl:1, 8pva:w, 7q4k:BX, 8q4f:w, 6q97:X, 6q98:X, 6q9a:X, 8qbt:X, 6qdw:0, 7qg8:k, 7qgh:k, 7qgn:k, 7qgr:k, 8qk7:X, 8qoa:w, 7qq3:f, 6qul:Y, 8r3v:12, 8r6c:w, 8r8m:w, 8rcl:12, 8rcm:12, 8rcs:12, 8rct:12, 8rpy:X, 8rpz:X, 8rq0:X, 8rq2:X, 6s0k:Y, 7s1g:f, 7s1h:f, 7s1i:f, 7s1j:f, 7s1k:f, 7sa4:X, 7ss9:x, 7ssd:x, 7ssl:x, 7ssn:x, 7sso:x, 7ssw:x, 7st2:x, 7st6:x, 7st7:x, 8syl:Z, 6szs:X, 8t5d:X, 8t5h:X, 6tbv:L281, 6tc3:L281, 7tos:L28, 4u1u:BX, 4u1u:DX, 4u1v:BX, 4u1v:DX, 4u20:BX, 4u20:DX, 4u24:BX, 4u24:DX, 4u25:BX, 4u25:DX, 4u26:BX, 4u26:DX, 4u27:BX, 4u27:DX, 5u4i:Y, 6u48:CY, 5u9f:26, 5u9g:26, 7ug7:Lb, 7uph:w, 8upo:c, 8upr:c, 8uql:c, 8uqm:c, 8uqp:c, 8ur0:c, 8urh:c, 8uri:c, 8urx:c, 8ury:c, 4uy8:X, 5uyk:26, 5uyl:26, 5uym:26, 5uyn:26, 5uyp:26, 5uyq:26, 4v50:BX, 4v50:DX, 4v52:BZ, 4v52:DZ, 4v53:BZ, 4v53:DZ, 4v54:BZ, 4v54:DZ, 4v55:BZ, 4v55:DZ, 4v56:BZ, 4v56:DZ, 4v57:BZ, 4v57:DZ, 4v5h:B0, 4v5y:BZ, 4v5y:DZ, 4v64:BZ, 4v64:DZ, 4v69:BX, 4v6c:BX, 4v6c:DX, 4v6d:BX, 4v6d:DX, 4v6e:BX, 4v6e:DX, 4v6k:AY, 4v6l:BY, 4v6m:BX, 4v6n:AZ, 4v6o:BZ, 4v6p:BZ, 4v6q:BZ, 4v6r:BZ, 4v6s:AZ, 4v6t:BX, 4v6v:B1, 4v6y:BX, 4v6z:BX, 4v70:BX, 4v71:BX, 4v72:BX, 4v73:BX, 4v74:BX, 4v75:BX, 4v76:BX, 4v77:BX, 4v78:BX, 4v79:BX, 4v7a:BX, 4v7b:BX, 4v7c:BZ, 4v7d:A1, 4v7i:AX, 4v7s:BX, 4v7s:DX, 4v7t:BX, 4v7t:DX, 4v7u:BX, 4v7u:DX, 4v7v:BX, 4v7v:DX, 4v85:B1, 4v89:B1, 4v9c:BX, 4v9c:DX, 4v9d:CX, 4v9d:DX, 4v9o:AX, 4v9o:CX, 4v9o:EX, 4v9o:GX, 4v9p:AX, 4v9p:CX, 4v9p:EX, 4v9p:GX, 8vs9:L28, 8vsa:L28, 6vu3:c, 6vwl:V, 6vwm:V, 6vwn:V, 6vyq:c, 6vyr:c, 6vys:c, 6vyt:c, 6vyu:c, 6vyw:c, 6vyx:c, 6vyy:c, 6vyz:c, 6vz2:c, 6vz3:c, 6vz5:c, 6vz7:c, 6vzj:c, 8w51:Y, 5wdt:X, 6wd0:x, 6wd1:x, 6wd2:x, 6wd3:x, 6wd4:x, 6wd5:x, 6wd6:x, 6wd7:x, 6wd8:x, 6wd9:x, 6wda:x, 6wdb:x, 6wdc:x, 6wdd:x, 6wde:x, 6wdf:x, 6wdg:x, 6wdh:x, 6wdi:x, 6wdj:x, 6wdk:x, 6wdl:x, 6wdm:x, 5we4:X, 5we6:X, 4wf1:BX, 4wf1:DX, 5wf0:X, 5wfk:X, 5wfs:X, 6wnt:x, 6wnv:x, 6wnw:x, 4woi:BX, 4woi:CX, 4www:RX, 4www:YX, 6x6t:c, 6x7f:c, 6x7k:c, 6x9q:c, 6xdq:c, 6xdr:c, 6xgf:c, 6xii:c, 6xij:c, 6xz7:X, 6xza:X2, 6xzb:X2, 6y69:X, 7y7c:w, 7y7d:w, 7y7e:w, 7y7f:w, 7y7g:w, 7y7h:w, 4ybb:CY, 4ybb:DY, 7yla:f, 6ys3:0, 6ysr:X, 6yss:X, 6yst:X, 6ysu:X, 7z20:0, 7zod:0, 7zp8:0, 7zq5:0, 7zq6:0, 6ztj:BY, 6ztl:BY, 6ztm:BY, 6ztn:BY, 6zto:BY, 6ztp:BY, 7zta:L281, 6zu1:BY
8 6dzi:y 77 66 0.2987 0.2987 0.3485 1.79e-09 6dzp:y, 8fr8:y
9 8fmw:AZ 91 81 0.3896 0.3297 0.3704 3.73e-05 8fn2:Z
10 7p7q:Z 61 56 0.2857 0.3607 0.3929 1.03e-04 7nhk:Z, 6o8w:Y, 6o8x:Y, 6o8y:Y, 6o8z:Y, 6o90:Y, 7p7r:Z, 7p7s:Z, 7p7t:Z, 7p7u:Z, 6w6p:Y, 6wu9:Y
11 6ywe:S 179 53 0.2987 0.1285 0.4340 0.001 6yws:S, 6ywv:S, 6ywx:S, 6ywy:S
12 5mrc:S 185 49 0.2208 0.0919 0.3469 0.019 3j6b:S, 5mre:S, 5mrf:S
13 8buu:X 61 56 0.2597 0.3279 0.3571 0.022 7aqc:X, 7aqd:X, 7as8:b, 7as9:b, 6ha1:X, 6ha8:X, 6htq:W, 3j9w:B0, 5njt:u, 7o5b:v, 7ope:b, 8qcq:X, 7qgu:Y, 7qh4:Y, 8qpp:v, 7qv1:u, 7qv2:u, 7qv3:u, 8r55:v, 8s1p:X, 8s1u:X, 6tnn:u, 6tpq:u
14 5myj:B0 61 30 0.1818 0.2295 0.4667 0.037
15 8p2f:1 61 54 0.2597 0.3279 0.3704 0.038 7asm:V, 7asn:V, 7aso:c, 7asp:V, 6ddd:J, 6ddg:J, 6fxc:AV, 6fxc:BV, 5hkv:U, 5hl7:U, 6hma:V, 5li0:0, 5nd8:0, 5nd9:0, 5ngm:AV, 7nhl:1, 7nhm:1, 8p2g:1, 8p2h:1, 7p48:V, 6s0x:V, 6s0z:V, 6s12:V, 6s13:V, 6sj6:0, 5t7v:LA, 5tcu:LA, 7ttu:J, 7ttw:J, 4wce:U, 4wfa:U, 4wfb:U, 6wqn:J, 6wqq:J, 6wrs:J, 6wru:J, 8y36:V, 8y37:V, 8y38:V, 8y39:V, 6yef:0
16 6z1p:AB 264 57 0.2208 0.0644 0.2982 0.046
17 6xyw:Ax 99 58 0.2338 0.1818 0.3103 0.053
18 8uu4:Z 60 34 0.1818 0.2333 0.4118 0.063 8a57:1, 8a5i:1, 8a63:1, 7nhn:1, 8uu5:Z, 8uu6:Z, 8uu7:Z, 8uu8:Z, 8uu9:Z, 8uua:Z
19 8r7i:A 628 44 0.2338 0.0287 0.4091 0.43
20 8kab:Y 63 54 0.1948 0.2381 0.2778 1.5 5o60:Y, 5o61:Y, 7s0s:Z, 8v9j:Z, 8v9k:Z, 8v9l:Z, 8whx:1, 8why:1, 8wi7:1, 8wi8:1, 8wib:1, 8wic:1, 7xam:Y, 5xym:X, 8xz3:Y, 7y41:Y, 5zeb:Y, 5zep:Y, 5zet:Y
21 6qs4:B 582 35 0.1558 0.0206 0.3429 1.8 6oax:C, 6oax:E, 6oax:D, 6oax:B, 6oax:A, 6oax:F, 6oay:C, 6oay:E, 6oay:D, 6oay:B, 6oay:A, 5og1:B, 6og1:F, 6og1:A, 6og2:A, 6qs4:A, 6qs4:F, 6qs6:A, 6qs6:B, 6qs6:E, 6qs6:F, 6qs7:A, 6qs7:B, 6qs7:F, 6qs8:A, 6qs8:B, 6qs8:F
22 6oay:F 558 35 0.1558 0.0215 0.3429 2.1 6og2:F
23 6qs4:C 630 35 0.1558 0.0190 0.3429 2.2 5og1:C, 5og1:D, 6qs4:D, 6qs4:E, 6qs6:C, 6qs6:D, 6qs7:C, 6qs7:D, 6qs7:E, 6qs8:C, 6qs8:D, 6qs8:E
24 7f0d:X 63 54 0.1948 0.2381 0.2778 2.3 7kgb:X, 7msc:X, 7msh:X, 7msm:X, 7msz:X, 7mt2:X, 7mt3:X, 7mt7:X, 7sfr:X, 5v7q:X, 5v93:X
25 4ciu:A 657 35 0.1558 0.0183 0.3429 2.3
26 6rn4:F 680 35 0.1558 0.0176 0.3429 2.4 6rn3:F, 6rn4:A
27 4cib:A 413 34 0.1558 0.0291 0.3529 2.6 4az0:A, 4az0:B, 4az3:A, 4az3:B, 4cia:A
28 6j0p:A 564 42 0.1818 0.0248 0.3333 2.6 6j0p:B, 6j1e:A, 6j1f:A, 6j1f:B, 6j1g:A, 6j1i:A, 6j1j:A
29 6ahr:B 774 49 0.2208 0.0220 0.3469 2.7 6ahu:B
30 5og1:A 819 35 0.1558 0.0147 0.3429 2.7 5ofo:C, 5ofo:F, 5ofo:E, 5ofo:D, 5ofo:B, 5ofo:A, 5og1:E, 6rn2:A, 6rn2:B, 6rn2:C, 6rn2:D, 6rn2:F, 6rn2:E, 6rn3:A, 6rn3:B, 6rn3:C, 6rn3:D, 6rn3:E, 6rn4:B, 6rn4:C, 6rn4:D, 6rn4:E
31 1u0j:A 261 59 0.2468 0.0728 0.3220 2.8
32 6sc2:B 3930 32 0.1429 0.0028 0.3438 4.6 6rla:A, 6rla:B, 6sc2:A
33 4rh7:A 3005 32 0.1429 0.0037 0.3438 4.8
34 2uzg:A 95 52 0.1818 0.1474 0.2692 5.0
35 7lvy:A 431 24 0.1429 0.0255 0.4583 5.8 7mco:A, 7mco:B
36 7ood:v 63 48 0.2338 0.2857 0.3750 6.0 7p6z:v, 7pah:v, 7pai:v, 7paj:v, 7pak:v, 7pal:v, 7pam:v, 7pan:v, 7pao:v, 7paq:v, 7par:v, 7pas:v, 7pat:v, 7pau:v, 7ph9:v, 7pha:v, 7phb:v, 7phc:v, 7pi8:v, 7pi9:v, 7pia:v, 7pib:v, 7pic:v, 7pio:v, 7pip:v, 7piq:v, 7pir:v, 7pis:v, 7pit:v

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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