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BioLiP
>protein
RRFYGKIVIKGKIKAVTGLHIGSQANPVIKDPHTGLPYIPGSSLKGRLRSLFEILVNSRLGEWREKYPSLANYSPGSCRP
DNQENCGKFFNRKINRGWIHVCPDYETALACPVCRLFGASGKESNFPSRIIVRDAFLTKEWEEKWRAGEAITEAKIEVGI
DRVTSQANPRTNERVVAGAEFEFEIIYNVENTTHWRDDIKNLLTAMALLEDSYLGGSGSRGYGKVKFIFDSFEFRPLDYY
RTGKDEDIVSIDAREKSVSDILSGFDSLFSEVEGKL

The query sequence (length=276) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6mur:D 287 285 1.0000 0.9617 0.9684 0.0 6iqw:C, 6iqw:D, 6mur:C, 6mus:C, 6mus:D, 6mus:K, 6mut:C, 6mut:D, 6muu:C, 6muu:D, 6o7e:C, 6o7e:D, 6o7h:C, 6o7h:D, 6o7i:C, 6o7i:D, 6o7i:K
2 6ifn:F 220 259 0.3152 0.3955 0.3359 7.73e-37 6ifk:G, 6ifk:F, 6ifk:E, 6ifl:D, 6ifl:E, 6ifl:F, 6ifn:E, 6ifn:G, 6ifr:G, 6ifr:F, 6ifr:E, 6ifu:D, 6ifu:E, 6ifu:F, 6ify:G, 6ify:F, 6ify:E, 6ifz:G, 6ifz:F, 6ifz:E, 6ig0:G, 6ig0:F, 6ig0:E, 6nud:C, 6nud:E, 6nud:N, 6nud:O, 6nud:P, 6nue:C, 6nue:E, 6nue:N, 6nue:O, 6nue:P
3 8x5d:K 235 246 0.2899 0.3404 0.3252 4.15e-30 8wfx:I, 8wfx:J, 8wfx:K, 8wfx:L, 8wfx:G, 8wfx:H, 8x5d:L, 8x5d:J, 8x5d:I, 8x5d:H
4 9ash:H 214 232 0.2754 0.3551 0.3276 4.18e-29 9ash:F, 9ash:G, 9ash:I, 9asi:F, 9asi:H, 9asi:G, 9asi:I, 6xn3:F, 6xn3:H, 6xn3:G, 6xn3:I, 6xn4:F, 6xn4:H, 6xn4:G, 6xn5:I, 6xn5:F, 6xn5:H, 6xn5:G, 6xn7:F, 6xn7:H, 6xn7:G, 6xn7:I
5 4qts:C 186 266 0.2971 0.4409 0.3083 1.48e-26 4qts:D
6 4n0l:A 335 273 0.2935 0.2418 0.2967 3.88e-25 4n0l:B
7 7uzw:E 184 224 0.2645 0.3967 0.3259 7.04e-23 7uzx:E
8 8do6:E 205 235 0.2862 0.3854 0.3362 1.17e-21 8do6:G, 8do6:F, 7uzw:A, 7uzw:B, 7uzw:C, 7uzw:D, 7uzx:A, 7uzx:B, 7uzx:C, 7uzx:D, 7uzy:D, 7uzy:C, 7uzy:A, 7uzy:B, 7uzz:D, 7uzz:C, 7uzz:A, 7uzz:B, 7v00:A, 7v00:B, 7v00:C, 7v00:D, 7v01:A, 7v01:B, 7v01:C, 7v02:A, 7v02:B, 7v02:C
9 8x5d:G 77 80 0.1087 0.3896 0.3750 5.50e-09
10 8x5d:G 77 40 0.0652 0.2338 0.4500 0.036
11 8bmw:F 239 239 0.2283 0.2636 0.2636 1.29e-07 8bmw:G
12 8bmw:H 275 276 0.2681 0.2691 0.2681 8.86e-05 8bmw:I
13 8s9u:E 678 86 0.0978 0.0398 0.3140 5.07e-04 8s9t:E, 8s9v:E, 8s9x:E
14 3x1l:D 331 59 0.0870 0.0725 0.4068 0.007 3x1l:C, 3x1l:E
15 8x5d:N 370 35 0.0652 0.0486 0.5143 0.017
16 8yhd:B 199 205 0.1739 0.2412 0.2341 0.019 8yhd:C, 8yhd:D, 8yhd:E, 8yhd:F, 8yhd:J, 8yhd:O, 8yhe:B, 8yhe:C, 8yhe:D, 8yhe:E, 8yhe:F, 8yhe:J, 8z4j:C, 8z4j:D, 8z4j:E, 8z4j:F, 8z4j:J, 8z4l:B, 8z4l:C, 8z4l:D, 8z4l:E, 8z4l:F, 8z4l:J, 8z99:B, 8z99:C, 8z99:D, 8z99:E, 8z99:F, 8z99:J, 8z99:P, 8z9c:B, 8z9c:C, 8z9c:D, 8z9c:E, 8z9c:F, 8z9c:J, 8z9e:C, 8z9e:D, 8z9e:E, 8z9e:F, 8z9e:J
17 8d8n:B 1256 105 0.1087 0.0239 0.2857 0.051 8d9e:B, 8d9i:B, 7y81:A
18 7y80:A 1218 105 0.1087 0.0246 0.2857 0.054 8gu6:A
19 7y84:A 1242 105 0.1087 0.0242 0.2857 0.059 7x7a:A, 7x7r:A, 7xc7:A, 7y83:A, 7y85:A
20 8d1v:A 1229 99 0.1087 0.0244 0.3030 0.066
21 8d1v:A 1229 256 0.2029 0.0456 0.2188 4.7
22 6s6b:I 284 32 0.0580 0.0563 0.5000 0.079 6s8b:I, 6s8e:I, 6s91:I, 6sh8:I, 6shb:I, 6sic:I
23 7xss:B 1282 105 0.1087 0.0234 0.2857 0.098 8d9f:B, 8d9h:B, 7x8a:A, 7xso:A, 7xsp:B, 7xt4:B
24 8bmw:J 270 135 0.1341 0.1370 0.2741 0.12
25 8eex:A 1284 99 0.1051 0.0226 0.2929 0.23
26 6ifr:H 353 36 0.0652 0.0510 0.5000 0.26 6ifk:H, 6ifl:H, 6ifn:H, 6ifu:H, 6ify:H, 6ifz:H, 6ig0:H
27 9ash:J 311 34 0.0616 0.0547 0.5000 0.31 9asi:J, 6xn3:J, 6xn4:J, 6xn5:J, 6xn7:J
28 7y8t:A 1298 105 0.1123 0.0239 0.2952 0.38 8d9g:B, 7xsq:A, 7xsr:B, 7y8y:A
29 8gna:A 1188 105 0.1051 0.0244 0.2762 0.53
30 4pqg:A 506 47 0.0543 0.0296 0.3191 0.59 4pqg:B
31 8wfx:N 265 18 0.0435 0.0453 0.6667 0.68
32 8z9e:B 170 199 0.1594 0.2588 0.2211 0.97 8yhd:A, 8z4j:B, 8z4l:A, 8z99:A, 8z9c:A
33 8s9u:D 518 63 0.0725 0.0386 0.3175 2.1 8s9t:D, 8s9v:D, 8s9x:D
34 6muu:F 323 16 0.0435 0.0372 0.7500 2.3
35 6mur:F 377 16 0.0435 0.0318 0.7500 2.7 6iqw:F, 6mus:F, 6mut:F
36 6o7e:Y 361 16 0.0435 0.0332 0.7500 2.7 6o7h:F, 6o7i:F
37 8wmc:A 1249 279 0.2210 0.0488 0.2186 3.0
38 7qvd:AAA 380 69 0.0725 0.0526 0.2899 3.6
39 6s6b:D 285 47 0.0652 0.0632 0.3830 3.9 6s6b:E, 6s6b:F, 6s6b:G, 6s8b:D, 6s8b:E, 6s8b:F, 6s8b:G, 6s8e:D, 6s8e:E, 6s8e:F, 6s8e:G, 6s91:D, 6s91:E, 6s91:F, 6s91:G, 6sh8:D, 6sh8:E, 6sh8:F, 6sh8:G, 6shb:D, 6shb:E, 6shb:F, 6shb:G, 6sic:D, 6sic:E, 6sic:F, 6sic:G
40 6flu:A 347 27 0.0435 0.0346 0.4444 6.0 6f5w:A, 6f5w:B, 6fhx:A, 6fhx:B, 6fhy:A, 6fhy:B, 6flu:B, 5mxf:A, 5mxg:A, 5mxh:A, 6rgj:A, 6rgr:A, 6rgu:A, 6rgw:A
41 5t2u:A 241 71 0.0725 0.0830 0.2817 6.1 5t2u:B, 5t2u:C, 5t2u:D
42 3x1l:H 297 12 0.0362 0.0337 0.8333 6.9
43 8s9x:A 770 182 0.1775 0.0636 0.2692 7.6 8s9t:A, 8s9u:A, 8s9v:A
44 7zol:B 1702 28 0.0471 0.0076 0.4643 9.3 7zoq:B
45 7vi6:A 342 52 0.0652 0.0526 0.3462 9.8 7vi6:B, 7vi7:A, 7vi7:B
46 4o48:A 298 66 0.0616 0.0570 0.2576 9.8 4o48:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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