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BioLiP
>protein
RRELHTLKGHVEAVVKLKGLDIETIQQSYDI

The query sequence (length=31) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3m50:P 31 31 1.0000 1.0000 1.0000 1.59e-16
2 6td5:I 219 23 0.3226 0.0457 0.4348 0.52 6td5:i
3 4n8y:A 300 27 0.3871 0.0400 0.4444 0.92 4n8y:B
4 2z1m:A 338 25 0.3226 0.0296 0.4000 1.5 2z1m:D, 2z95:A, 2z95:D
5 7kgy:A 593 22 0.2258 0.0118 0.3182 2.9 7kgy:B, 7kgy:C, 7kgy:D
6 2ovq:B 444 27 0.3548 0.0248 0.4074 7.7 2ovr:B, 7t1y:B, 7t1z:B, 5v4b:B
7 3sn0:A 401 25 0.2903 0.0224 0.3600 8.7 3go2:A, 3sn1:A, 3sn4:A
8 4eue:A 398 30 0.2903 0.0226 0.3000 9.1 4euf:A
9 8c6j:J 367 32 0.3548 0.0300 0.3438 9.7 8ch6:O, 7dh6:B, 7dh6:C, 7dh6:D, 6ff4:D, 9fmd:T, 8i0p:T, 8i0r:T, 8i0t:T, 8i0w:T, 6id0:T, 6id1:T, 6qdv:J, 8ro2:T, 5xjc:T, 5yzg:T, 5z56:T, 5z57:T, 5z58:T, 6zym:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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