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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RRELEKYMPDITIGPKALVTPVSLMNARNGHRVTHDLLHSYDPHIGDPNRVGLNAATLDCRGRIYRWLRRGPFFQVDNYF
RRSVKLNRDGTLPTDFVHEAPLMRKIIRLAHRGHLKAACEEYRRVTTVPPVEVYRALTACCVPGAKLADAVSIFEDGDSK
LFYVSRDGEVLHNLMRCAIAARHRARIMWVYNVMRGRFYENVVVRAEVDLIWRYRIAMIALEYLLDHECAEEAAAIYSYL
VEEELLRCDVHVRVGLHMREAIAAGKPITLNNDVMNATSLVRDATAVAPEVARELQRRHAQTLQNNAVEAVGAGSAPWSI
LGPLTAIGPTAEDTMVWLQQHYGDVDVMSIMRWARFRKGKDLMAKDRPQYLARAAAWIELLSKRNREMEEVPLTYMRKSK
PLVLDTNSNVRVAWQTPLMRSGGPPRLLAREEGYVFHHSNSSRFVEETYRHPGESLQSRYLALQPLHTEVSAKEDFQRLY
YQAQKHHKQQE

The query sequence (length=491) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7pua:DF 594 512 1.0000 0.8266 0.9590 0.0 6hiv:DF, 6hiw:DF, 6hiz:DF, 7pub:DF, 6sg9:DF, 6sgb:DF
2 7aor:ae 574 503 0.7413 0.6341 0.7237 0.0
3 7ane:ae 584 494 0.5967 0.5017 0.5931 0.0
4 3ang:C 201 57 0.0367 0.0896 0.3158 1.6 3ang:D, 3ang:A, 3ang:B, 3anp:C, 3anp:D, 3anp:A, 3anp:B
5 3rb8:A 314 89 0.0489 0.0764 0.2697 2.8 3j5v:a, 3r4v:A
6 1jku:A 266 62 0.0326 0.0602 0.2581 3.8 1jku:F, 1jku:B, 1jku:C, 1jku:D, 1jku:E, 1jkv:A, 1jkv:F, 1jkv:B, 1jkv:C, 1jkv:D, 1jkv:E, 1o9i:A, 1o9i:F, 1o9i:B, 1o9i:C, 1o9i:D, 1o9i:E
7 4hn1:C 201 95 0.0509 0.1244 0.2632 5.2 4hmz:A, 4hmz:B, 4hmz:C, 4hmz:D, 4hn1:A, 4hn1:B, 4hn1:D
8 6bqz:A 215 58 0.0346 0.0791 0.2931 5.7 6bqz:B
9 6sl2:A 619 57 0.0428 0.0339 0.3684 9.4 5nl7:A, 6sl3:A
10 3wx7:A 402 34 0.0285 0.0348 0.4118 9.4 3wx7:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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