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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RREIRVLHLLEQIRAYCETCWEWQEAHNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGL
TNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGS
VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT
NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN
LMA

The query sequence (length=323) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5iz8:A 343 326 0.9814 0.9242 0.9724 0.0 5b6g:A, 7f6m:A, 7f7o:A, 8gsj:A, 5iz6:A, 5iz8:B, 5iz9:A, 5iza:A, 3nmx:A, 3nmx:B, 3nmx:C, 3qhe:A, 3qhe:C, 4yje:A, 4yjl:A, 4yjl:C, 4yjl:D, 4yjl:E, 4yjl:B, 4yjl:F, 4yk6:A, 5z8h:A
2 6s9o:F 343 275 0.2260 0.2128 0.2655 4.88e-04 5aei:A, 5aei:B, 5aei:C, 5mfd:A, 5mfd:C, 5mfd:E, 5mfd:I, 5mfd:G, 5mfd:J, 5mfd:K, 5mfd:L, 5mfe:A, 5mfe:B, 5mfe:C, 5mfe:D, 5mff:A, 5mff:B, 5mff:C, 5mff:D, 5mfg:A, 5mfh:A, 5mfh:B, 5mfh:C, 5mfh:D, 5mfl:A, 5mfl:B, 5mfl:C, 5mfm:A, 5mfm:B, 5mfm:C, 5mfm:E, 5mfm:D, 5mfm:F, 5mfn:B, 5mfn:A, 5mfo:A, 5mfo:C, 5mfo:E, 6s9l:A, 6s9l:B, 6s9m:A, 6s9m:E, 6s9m:B, 6s9m:C, 6s9m:D, 6s9m:F, 6s9n:A, 6s9n:E, 6s9n:B, 6s9n:C, 6s9n:F, 6s9n:D, 6s9o:A, 6s9o:B, 6s9o:C, 6s9o:D, 6s9o:E
3 6s9o:F 343 91 0.0774 0.0729 0.2747 0.26 5aei:A, 5aei:B, 5aei:C, 5mfd:A, 5mfd:C, 5mfd:E, 5mfd:I, 5mfd:G, 5mfd:J, 5mfd:K, 5mfd:L, 5mfe:A, 5mfe:B, 5mfe:C, 5mfe:D, 5mff:A, 5mff:B, 5mff:C, 5mff:D, 5mfg:A, 5mfh:A, 5mfh:B, 5mfh:C, 5mfh:D, 5mfl:A, 5mfl:B, 5mfl:C, 5mfm:A, 5mfm:B, 5mfm:C, 5mfm:E, 5mfm:D, 5mfm:F, 5mfn:B, 5mfn:A, 5mfo:A, 5mfo:C, 5mfo:E, 6s9l:A, 6s9l:B, 6s9m:A, 6s9m:E, 6s9m:B, 6s9m:C, 6s9m:D, 6s9m:F, 6s9n:A, 6s9n:E, 6s9n:B, 6s9n:C, 6s9n:F, 6s9n:D, 6s9o:A, 6s9o:B, 6s9o:C, 6s9o:D, 6s9o:E
4 6kbn:C 504 271 0.2167 0.1389 0.2583 0.001 6kbm:A, 6kbn:A
5 6kbn:C 504 170 0.1362 0.0873 0.2588 0.11 6kbm:A, 6kbn:A
6 6kbn:C 504 84 0.0650 0.0417 0.2500 0.19 6kbm:A, 6kbn:A
7 3l6x:A 434 254 0.1950 0.1452 0.2480 0.008 3l6y:A, 3l6y:C, 3l6y:E
8 4bqk:A 424 236 0.1765 0.1344 0.2415 0.023 4b8o:A, 4b8p:A, 4b8p:B, 4bpl:A, 4bqk:B, 2yns:A, 2yns:B
9 1qz7:A 524 207 0.1548 0.0954 0.2415 1.1 7afw:A, 7ar4:AAA, 4djs:A, 8ei9:A, 8eia:A, 8eib:A, 8eic:A, 2gl7:A, 2gl7:D, 1i7w:A, 1i7w:C, 1jpp:A, 1jpp:B, 1jpw:A, 1jpw:B, 1jpw:C, 3ouw:A, 8ru3:A, 8ru4:A, 8ru4:B, 3sl9:A, 3sl9:E, 3sl9:B, 3sl9:G, 1t08:A, 7uwi:A, 7uwo:A, 8y0p:A, 8y0p:B, 8z10:A
10 8fru:Y 135 45 0.0433 0.1037 0.3111 5.9 8br8:LZ, 8brm:LZ, 8bsi:LZ, 8bsj:LZ, 8btd:LZ, 8btr:LZ, 7pwg:Y, 7pwo:Y2
11 5ksw:B 262 82 0.0805 0.0992 0.3171 7.1 5ksw:D, 5ue9:B, 5ue9:D
12 6qhd:B 532 115 0.1022 0.0620 0.2870 7.4
13 7dvq:K 188 119 0.0867 0.1489 0.2353 7.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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