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BioLiP
>protein
RRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSP
DIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHG
DMNVILWPIQSGILHFCGFQVLESQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFLMKKEV
QDEEKNKKFGLSVGHHLGKSIPTDNQIKAR

The query sequence (length=270) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ea2:C 276 270 0.9963 0.9746 0.9963 0.0 5a4k:A, 5a4k:B, 5a4k:C, 5a4k:D, 8c9j:A, 8c9j:B, 8c9j:C, 8c9j:D, 4cet:A, 4cf6:A, 4cf6:B, 1d4a:A, 1d4a:B, 1d4a:D, 1d4a:C, 1dxo:A, 1dxo:C, 1dxo:B, 1dxo:D, 5ea2:A, 5ea2:E, 5ea2:G, 5eai:A, 5eai:B, 5eai:C, 5eai:D, 5eai:E, 5eai:F, 5eai:G, 5eai:H, 5eai:I, 5eai:J, 5eai:K, 5eai:L, 5eai:M, 5eai:N, 2f1o:A, 2f1o:C, 2f1o:B, 2f1o:D, 2f1o:E, 2f1o:F, 2f1o:G, 2f1o:H, 5fuq:A, 5fuq:B, 6fy4:A, 6fy4:B, 6fy4:C, 6fy4:D, 1gg5:A, 1gg5:C, 1gg5:B, 1gg5:D, 1h66:A, 1h66:C, 1h66:B, 1h66:D, 1h69:A, 1h69:C, 1h69:B, 1h69:D, 3jsx:A, 3jsx:B, 3jsx:C, 3jsx:D, 3jsx:E, 3jsx:G, 3jsx:F, 3jsx:H, 1kbo:A, 1kbo:C, 1kbo:B, 1kbo:D, 1kbq:A, 1kbq:C, 1kbq:B, 1kbq:D, 6llc:A, 6llc:D, 6llc:B, 6llc:F, 6llc:C, 6llc:E, 6llc:G, 6llc:H, 6llc:I, 6llc:J, 6llc:K, 6llc:L, 8ok0:A, 8ok0:D, 8ok0:B, 8ok0:C, 8pqn:A, 8pqn:B, 8pqn:C, 8pqn:D, 1qbg:A, 1qbg:B, 1qbg:C, 1qbg:D, 8rfm:A, 8rfm:B, 8rfm:C, 8rfm:D, 8rfn:A, 8rfn:B, 8rfn:C, 8rfn:D
2 1dxq:A 273 270 0.8593 0.8498 0.8593 6.66e-179 1dxq:C, 1dxq:B, 1dxq:D, 1qrd:A, 1qrd:B
3 4fgl:D 233 218 0.3889 0.4506 0.4817 8.44e-72 5buc:A, 5buc:B, 2bzs:A, 2bzs:B, 4fgj:A, 4fgj:B, 4fgk:A, 4fgk:B, 4fgl:A, 4fgl:B, 4fgl:C, 3fw1:A, 3g5m:A, 3g5m:B, 3gam:A, 3gam:B, 4gqi:A, 4gqi:B, 4gr9:A, 4gr9:B, 5lbt:A, 5lbt:B, 5lbu:A, 5lbu:B, 5lbw:A, 5lbw:B, 5lby:A, 5lby:B, 5lbz:A, 5lbz:B, 3nfr:A, 3nfr:B, 3nhf:A, 3nhf:B, 3nhj:A, 3nhj:B, 3nhk:A, 3nhk:B, 3nhl:A, 3nhl:B, 3nhp:A, 3nhp:B, 3nhr:A, 3nhr:B, 3nhs:A, 3nhs:B, 3nhu:A, 3nhu:B, 3nhw:A, 3nhw:B, 3nhy:A, 3nhy:B, 3o2n:A, 3o2n:B, 7o4d:A, 7o4d:B, 3o73:A, 3o73:B, 3ovm:A, 3ovm:B, 3owh:A, 3owh:B, 3owx:A, 3owx:B, 3ox1:A, 3ox1:B, 3ox2:A, 3ox2:B, 3ox3:A, 3ox3:B, 2qmy:A, 2qmy:B, 2qmz:A, 2qmz:B, 4qod:A, 4qod:B, 4qoe:A, 4qoe:B, 4qof:A, 4qof:B, 4qog:A, 4qog:B, 4qoh:A, 4qoh:B, 4qoi:A, 4qoi:B, 4qoj:A, 4qoj:B, 1qr2:A, 1qr2:B, 2qr2:A, 2qr2:B, 2qwx:A, 2qwx:B, 2qx4:A, 2qx4:B, 2qx6:A, 2qx6:B, 2qx8:A, 2qx8:B, 2qx9:A, 2qx9:B, 1sg0:A, 1sg0:B, 3te7:A, 3te7:B, 3tem:A, 3tem:B, 3tzb:A, 3tzb:B, 3tzb:C, 3tzb:D, 4u7f:A, 4u7f:B, 4u7g:A, 4u7g:B, 4u7h:A, 4u7h:B, 3uxe:A, 3uxe:B, 3uxh:A, 3uxh:B, 4xdg:A, 4xdg:B, 4xdh:A, 4xdh:B, 1xi2:A, 1xi2:B, 4zvk:A, 4zvk:B, 4zvl:A, 4zvl:B, 4zvm:A, 4zvm:B, 4zvn:A, 4zvn:B, 1zx1:A, 1zx1:B
4 4gi5:B 261 227 0.3259 0.3372 0.3877 2.05e-41 4gi5:A
5 4f8y:A 196 217 0.2407 0.3316 0.2995 6.10e-15 4f8y:B, 4f8y:C, 4f8y:D, 3lcm:A, 3lcm:B, 3lcm:C, 3lcm:D
6 3l9w:B 357 102 0.1333 0.1008 0.3529 2.77e-13 3eyw:A, 3eyw:B, 3l9w:A
7 3l9x:A 336 102 0.1333 0.1071 0.3529 2.91e-13 3l9x:B
8 4r81:A 199 162 0.1704 0.2312 0.2840 4.91e-13 4r81:B, 4r81:C, 4r81:D
9 5lva:A 174 150 0.1444 0.2241 0.2600 4.34e-09 5lva:B
10 3f2v:A 174 88 0.1074 0.1667 0.3295 5.99e-09
11 6dxp:A 206 179 0.1741 0.2282 0.2626 5.81e-05 6dxp:C, 6dxp:B, 6dxp:D, 8h4j:A, 8h4j:B, 8h4j:C, 8h4j:D, 8h4j:E, 8h4j:F, 8h4j:G, 8h4j:H, 7n2w:A, 7n2w:B, 7n2w:C, 7n2w:D
12 4c0w:A 200 58 0.0815 0.1100 0.3793 2.86e-04 4c0x:A, 4c14:A
13 7n2x:A 201 172 0.1556 0.2090 0.2442 0.005 2d5i:A, 1v4b:A, 2z98:A, 2z9b:A, 2z9c:A, 2z9d:A, 2z9d:B
14 1t5b:A 199 117 0.1148 0.1558 0.2650 0.017 1t5b:B
15 3rpe:A 196 77 0.0926 0.1276 0.3247 0.021 3rpe:B
16 2b3d:A 193 48 0.0630 0.0881 0.3542 0.040 2b3d:B
17 2hpv:A 207 111 0.1074 0.1401 0.2613 0.066 2hpv:B, 2hpv:C, 2hpv:D
18 4m0c:A 212 68 0.0556 0.0708 0.2206 0.21 4m0c:B
19 6jxn:B 212 190 0.1815 0.2311 0.2579 0.24 6jxn:A, 6jxn:C, 6jxn:D, 6jxs:A, 6jxs:B, 6jxs:C, 6jxs:D
20 6kd5:B 238 92 0.0889 0.1008 0.2609 0.29
21 6qu0:A 211 144 0.1556 0.1991 0.2917 0.77 6qu0:B
22 5abt:A 246 85 0.0963 0.1057 0.3059 2.0 5a5w:A, 5ab3:A, 5ab3:B, 5ab3:C, 5ahf:A, 5ahi:A, 5g4w:A
23 3ziu:A 621 50 0.0667 0.0290 0.3600 2.1 3ziu:B
24 1k7h:A 476 83 0.0926 0.0525 0.3012 2.4 1k7h:B, 1shn:A, 1shn:B, 1shq:A, 1shq:B
25 6xyw:Av 198 52 0.0667 0.0909 0.3462 2.7
26 5hgq:B 482 81 0.0778 0.0436 0.2593 3.0 5hgq:A, 5hgq:D, 5hgq:C
27 3hh8:A 280 74 0.0889 0.0857 0.3243 3.4 8yj6:C, 8yj7:B, 8yj7:D, 8yj7:A, 8yj7:C, 8yj8:A, 8yj8:B
28 3w78:A 210 57 0.0630 0.0810 0.2982 3.5 3w78:B, 3w78:D, 3w78:C, 3w79:A, 3w79:B, 3w79:C, 3w79:D, 3w7a:A, 3w7a:B, 3w7a:C, 3w7a:D
29 7jro:e 94 38 0.0519 0.1489 0.3684 4.3 7jrp:e
30 3r6w:A 211 55 0.0593 0.0758 0.2909 6.7 3keg:A, 3keg:B, 3lt5:A, 3lt5:B, 4n65:A, 4n65:B, 4n9q:A, 4n9q:B, 3r6w:B, 2v9c:A, 2v9c:B
31 3w77:A 207 176 0.1556 0.2029 0.2386 7.0 3w77:B
32 2ef5:A 273 30 0.0444 0.0440 0.4000 8.6 2ef5:B, 2ef5:D, 2ef5:E, 2ef5:F, 2ef5:G
33 5ejq:A 498 40 0.0519 0.0281 0.3500 8.6
34 3lss:A 438 36 0.0556 0.0342 0.4167 9.1
35 3lss:B 468 36 0.0556 0.0321 0.4167 9.1 6rlt:A, 6rlt:B, 6rlu:A, 6rlu:B, 6rlv:A, 6rlv:B
36 7awv:A 210 64 0.0481 0.0619 0.2031 9.2 7awv:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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