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BioLiP
>protein
RQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITP
DGADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKT

The query sequence (length=116) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ihp:B 681 110 0.9483 0.1615 1.0000 4.47e-77 6dxh:A, 6dxt:A, 6dxt:B, 2g43:A, 2g43:B, 2g45:A, 2g45:D, 3ihp:A, 7ms5:A, 7ms5:B, 7ms6:A, 7ms7:A, 7ms7:B, 6nft:A, 6nft:B, 6p9g:A
2 2l80:A 114 114 0.7241 0.7368 0.7368 3.15e-62
3 5g0f:A 110 82 0.1897 0.2000 0.2683 1.43e-04
4 3c5k:A 108 85 0.1897 0.2037 0.2588 0.003 5b8d:A, 6ce6:A, 6ce8:A, 6cea:A, 6cec:A, 6ced:A, 6cee:A, 6cef:A, 8g43:A, 8g44:A, 8g45:A, 3gv4:A, 5kh3:A, 5kh7:A, 5kh9:A, 3phd:A, 3phd:B, 3phd:C, 3phd:D, 5wbn:A, 5wpb:A, 7zyu:A
5 1bxr:A 1073 34 0.1207 0.0130 0.4118 1.9 1a9x:A, 1a9x:C, 1a9x:E, 1a9x:G, 1bxr:C, 1bxr:E, 1bxr:G, 1c30:A, 1c30:C, 1c30:E, 1c30:G, 1c3o:A, 1c3o:C, 1c3o:E, 1c3o:G, 1ce8:A, 1ce8:C, 1ce8:E, 1ce8:G, 1cs0:A, 1cs0:C, 1cs0:E, 1cs0:G, 1jdb:B, 1jdb:E, 1jdb:H, 1jdb:K, 1kee:A, 1kee:C, 1kee:E, 1kee:G, 1m6v:A, 1m6v:C, 1m6v:E, 1m6v:G, 1t36:A, 1t36:C, 1t36:E, 1t36:G
6 2d9l:A 134 26 0.0948 0.0821 0.4231 2.5 2olm:A
7 8y6o:U 458 65 0.1466 0.0371 0.2615 2.7 8h6e:4T, 8h6j:4T, 6qw6:U, 6qx9:U
8 2hru:A 581 91 0.1897 0.0379 0.2418 5.5 2hry:A, 2hs0:A
9 2hs3:A 602 91 0.1897 0.0365 0.2418 5.6 3d54:A, 3d54:E, 3d54:I, 2hs4:A
10 6sga:FS 277 58 0.1207 0.0505 0.2414 5.9 6sga:FQ, 6sga:FR, 6sga:FU, 6sgb:FQ, 6sgb:FR, 6sgb:FU
11 6adi:A 418 30 0.1121 0.0311 0.4333 6.8 6adi:B, 5h3e:B, 5h3f:A, 5h3f:B, 5i95:A, 5i96:A, 5i96:B, 4ja8:A, 4ja8:B, 5svn:A, 5svn:B, 5svo:A, 5svo:B, 6vfz:A, 6vfz:B
12 6ei1:A 335 28 0.1034 0.0358 0.4286 6.9
13 2vf8:B 835 29 0.1207 0.0168 0.4828 9.4 2vf7:A, 2vf7:C
14 2vf7:B 813 29 0.1207 0.0172 0.4828 9.5 2vf8:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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