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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RQVGYFADNGVGNPLAIVQHPAGIHKNGITYVSYQGPKEDPYIASYNHQTGQWQGPFRAGISELGRRDGGKKFDNNGKPT
MLIDDEGYIHIFYGGHGGQASNGKNPLGNTHHGANKHAVSKRPYDISQWEDLNNITPFGTYNQAIKMDNGDIYLFFRHGA
HRSDWVYQKSVDNGRTFASPVSFLKHKRRTDIDAVDSWYAWAGKGQGDNIIVSYDYHVCWDGGAGVNGRGHTTERHDVYF
MSFNTKTGEWSNVEGEKLVLPVTREVADEKTMAMRTGELWTFNGSTHLDAQGQPHIAINAGIDKGAKTGGPKQTRHVRWN
GNEWVGGDKVIPQYERVSRGDFMVTDPENIRYLTTYNQDNDAVLSWWQSHDGGEHFVEDKTVLRKDNASFAISAFIKDAI
PDAQMLVAEKVSDEGIKMYLVGEEGAVTRSLVDLKTAMPT

The query sequence (length=440) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5uam:A 440 439 0.9955 0.9955 0.9977 0.0 5uam:B, 5uas:A, 5uas:B
2 7czh:A 481 102 0.0659 0.0603 0.2843 0.060 7czh:B, 7drq:A, 7drq:B
3 3ano:B 175 96 0.0659 0.1657 0.3021 0.32
4 5nri:A 311 43 0.0364 0.0514 0.3721 1.0 5nrh:A, 5nrh:B, 5nri:B
5 2rdx:A 369 79 0.0500 0.0596 0.2785 1.5 2rdx:B, 2rdx:C, 2rdx:D, 2rdx:E, 2rdx:F, 2rdx:G, 2rdx:H
6 4j2o:C 316 60 0.0386 0.0538 0.2833 2.4 4j2o:A, 4j2o:B, 4j2o:D, 4j2o:E, 4j2o:F
7 5mul:A 378 225 0.1045 0.1217 0.2044 7.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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